Prupe.7G129200_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
14919070 .. 14919407
338 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G129200.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 261 bp
ATGCCTGTTAAAGCAGATGCATCAGTGTGGAAAGCCTTGCTCAATGCTTGTCAACTTCATTCTGCCACGAAGTTAGCTGGAGCCATATATATGCTGCAGCAGGTCTATGGATGGAGCCAGGTCCATTGTTTCGTTGCCGGAGACACATCACACCTTCAATCAGACATAATTTATGCAAGTTTAAATTCTTTGTTAACCTTGATAAAAGAAAGTGGGTACATTCCTGATCTTCGATTGGTTTTGCGTGACGAAGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.48

Weight (kDa)

5.79

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 94, 97
ApoI RAATTY 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 81, 109
BccI CCATC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 91
BisI GCNGC 2 cut(s) 95, 98
BlsI GCNGC 2 cut(s) 96, 99
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 82, 116
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 7, 29
BpmI CTGGAG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 81, 109
BsiSI CCGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 82, 116
BspMAI CTGCAG 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 91
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 246
BstF5I GGATG 1 cut(s) 116
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 81, 109
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 217
CviJI RGCY 4 cut(s) 35, 77, 83, 117
CviKI_1 RGCY 4 cut(s) 35, 77, 83, 117
CviQI GTAC 1 cut(s) 217
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 22
FaiI YATR 7 cut(s) 86, 88, 90, 92, 108, 167, 174
Fnu4HI GCNGC 2 cut(s) 95, 98
FokI GGATG 1 cut(s) 123
Fsp4HI GCNGC 2 cut(s) 95, 98
GluI GCNGC 2 cut(s) 95, 98
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 1 cut(s) 138
HincII GTYRAC 2 cut(s) 53, 195
HindII GTYRAC 2 cut(s) 53, 195
HpaI GTTAAC 1 cut(s) 195
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 53, 195
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 53, 195
HpyAV CCTTC 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 20, 97, 176
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 80, 114
LpnPI CCDG 7 cut(s) 18, 63, 86, 104, 131, 151, 237
Lsp1109I GCAGC 2 cut(s) 81, 109
LweI GCATC 2 cut(s) 7, 29
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 221
MluCI AATT 2 cut(s) 168, 184
MnlI CCTC 1 cut(s) 247
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 3 cut(s) 9, 182, 194
MslI CAYNNNNRTG 2 cut(s) 25, 89
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 82, 116
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 22
PkrI GCNGC 2 cut(s) 96, 99
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 82, 116
PspPI GGNCC 1 cut(s) 121
PstI CTGCAG 1 cut(s) 99
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 25, 89
SaqAI TTAA 3 cut(s) 9, 182, 194
SatI GCNGC 2 cut(s) 95, 98
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 119
SetI ASST 5 cut(s) 79, 105, 123, 156, 200
SfaNI GCATC 2 cut(s) 7, 29
SfcI CTRYAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 25, 89
Sse9I AATT 2 cut(s) 168, 184
StyD4I CCNGG 1 cut(s) 117
TaqI TCGA 1 cut(s) 232
TasI AATT 2 cut(s) 168, 184
Tru1I TTAA 3 cut(s) 9, 182, 194
Tru9I TTAA 3 cut(s) 9, 182, 194
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 94, 97
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.