Prupe.7G131200_v2.0.a1

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
15043867 .. 15045183
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G131200.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 561 bp
ATGGCTTCTGATCCCGAATGGCAGCAAGAGCAAGCTGGTGGGCACAAGGAAATTGGCCACAAGAGTCTCTTAGAGAGCGATGCTCTTTACCAACAAAACACCCTTGGTAAGGTTGCGGCTTATCATATATTGTGTACATACGTTTTGGTATGCTTCTCAAACACTATGGAAATTGGCGTTTATATTGGTTACTCTTTGCTTTCTACCCTGGGTCTTCCCCAAGATGGAAAGATATTGGCAATGGACATCAACCGTGAGAATTACGAACTAGGTTTGCCCATTATTCAAAACGCCGGCGTTTCTCACAAGATTGACTTCAGAGAAGGATTGAAGATAAAATATCATGGAACGTTTGATTTCATTTTCGTGGATGCTGACAAGGATAATTACTTGAACTACCACAAGAGGATCATTGAGCTTGAGAAGGATGGGGGAGTGATTGGCCACGACAACACCCTTTGGAATGCGTCTGTGGTGGCCCCACCTGATGCACCATTGATGAACTACGTTAGGTTTGATAGGGACTTCGTGTTGGAGCTCAAACATGGCTCTTACTGTTGA

Protein Analysis

187

Amino Acids

21.01

Weight (kDa)

5.26

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AclI AACGTT 1 cut(s) 350
AclWI GGATC 2 cut(s) 5, 416
AcoI YGGCCR 2 cut(s) 55, 442
AcuI CTGAAG 1 cut(s) 301
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 109, 224
AgsI TTSAA 3 cut(s) 287, 331, 394
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 3 cut(s) 35, 418, 538
AluI AGCT 3 cut(s) 35, 418, 538
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 5, 416
AoxI GGCC 3 cut(s) 55, 442, 477
ApeKI GCWGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 45
BalI TGGCCA 2 cut(s) 57, 444
BanII GRGCYC 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 218, 422
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 269
BisI GCNGC 2 cut(s) 23, 117
BlsI GCNGC 2 cut(s) 24, 118
Bme1390I CCNGG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 3 cut(s) 70, 361, 478
BpiI GAAGAC 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BpuEI CTTGAG 1 cut(s) 440
BsaJI CCNNGG 3 cut(s) 103, 207, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 224
Bse118I RCCGGY 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 103, 207, 208
BseGI GGATG 2 cut(s) 376, 433
BseLI CCNNNNNNNGG 2 cut(s) 109, 224
BseMI GCAATG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 3 cut(s) 57, 444, 479
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 2 cut(s) 109, 224
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 3 cut(s) 57, 444, 479
Bsp1286I GDGCHC 2 cut(s) 45, 540
Bsp1407I TGTACA 1 cut(s) 134
Bsp143I GATC 2 cut(s) 10, 408
BspACI CCGC 1 cut(s) 116
BspANI GGCC 3 cut(s) 57, 444, 479
BspLI GGNNCC 1 cut(s) 480
BspPI GGATC 2 cut(s) 5, 416
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 103, 207, 208
BssMI GATC 2 cut(s) 10, 408
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 254, 557
BstAUI TGTACA 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 33, 295
BstDEI CTNAG 1 cut(s) 70
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 376, 433
BstKTI GATC 2 cut(s) 13, 411
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 10, 408
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 206
BsuRI GGCC 3 cut(s) 57, 444, 479
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 376, 433
Cac8I GCNNGC 2 cut(s) 33, 295
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 1 cut(s) 456
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 344, 545
CviJI RGCY 9 cut(s) 5, 35, 57, 119, 418, 444, 479, 538, 549
CviKI_1 RGCY 9 cut(s) 5, 35, 57, 119, 418, 444, 479, 538, 549
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 70
DpnI GATC 2 cut(s) 12, 410
DpnII GATC 2 cut(s) 10, 408
EaeI YGGCCR 2 cut(s) 55, 442
Ecl136II GAGCTC 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 540
Eco53kI GAGCTC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 538
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 347, 548
FaiI YATR 8 cut(s) 126, 128, 139, 151, 167, 183, 345, 546
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 299, 331
FaqI GGGAC 1 cut(s) 536
FatI CATG 2 cut(s) 343, 544
Fnu4HI GCNGC 2 cut(s) 23, 117
FokI GGATG 2 cut(s) 383, 440
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 2 cut(s) 23, 117
FspBI CTAG 1 cut(s) 269
GluI GCNGC 2 cut(s) 23, 117
HaeIII GGCC 3 cut(s) 57, 444, 479
HapII CCGG 1 cut(s) 294
HgaI GACGC 1 cut(s) 456
Hin1II CATG 2 cut(s) 347, 548
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 10, 320
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 317, 418
HpyCH4III ACNGT 2 cut(s) 254, 557
HpyCH4IV ACGT 3 cut(s) 141, 350, 507
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 3 cut(s) 141, 350, 507
Hsp92II CATG 2 cut(s) 347, 548
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 10, 408
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 5 cut(s) 21, 194, 221, 307, 498
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 3 cut(s) 70, 361, 478
MaeI CTAG 1 cut(s) 269
MaeII ACGT 3 cut(s) 141, 350, 507
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 12, 410
MboI GATC 2 cut(s) 10, 408
MboII GAAGA 2 cut(s) 206, 343
MhlI GDGCHC 2 cut(s) 45, 540
MlsI TGGCCA 2 cut(s) 57, 444
MluCI AATT 4 cut(s) 51, 171, 259, 385
MluNI TGGCCA 2 cut(s) 57, 444
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 1 cut(s) 399
Mox20I TGGCCA 2 cut(s) 57, 444
MreI CGCCGGCG 1 cut(s) 293
MroNI GCCGGC 1 cut(s) 293
MscI TGGCCA 2 cut(s) 57, 444
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 2 cut(s) 57, 444
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 28
NaeI GCCGGC 1 cut(s) 295
NdeII GATC 2 cut(s) 10, 408
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 2 cut(s) 347, 548
NlaIV GGNNCC 1 cut(s) 480
PasI CCCWGGG 1 cut(s) 208
PctI GAATGC 1 cut(s) 469
PdiI GCCGGC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 24, 118
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 540
Psp1406I AACGTT 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 478
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 365
SacI GAGCTC 1 cut(s) 540
SatI GCNGC 2 cut(s) 23, 117
Sau3AI GATC 2 cut(s) 10, 408
Sau96I GGNCC 1 cut(s) 478
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 2 cut(s) 45, 540
SfaNI GCATC 3 cut(s) 70, 361, 478
SgrAI CRCCGGYG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 51, 171, 259, 385
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 1 cut(s) 540
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 254, 557
TaiI ACGT 3 cut(s) 144, 353, 510
TasI AATT 4 cut(s) 51, 171, 259, 385
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 119
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 349, 515
XagI CCTNNNNNAGG 1 cut(s) 107
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.