Prupe.7G142400_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
15729152 .. 15730480
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G142400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 1014 bp
ATGCAGCATTCAATCTTATACTCTGTAGTAGCTTTTATGCTACTTGTGACTGAGTTGCAAAGCTATGCTGGAGCTCATGGCATTGGGGCAAATTATGGTAGACAAGGTGACAACCTTCCAACTCCGGACAAAGTAATCCAGCTATGTAAATCCAGGAACATTCAAAGAATTCGTATTTTCGATCCACAACAAGATGTTCTGCAGGCACTGCAAGGGTCAGGAATACAAGTCATCATAGGTACACTGAACATAGATGTCCCAACCCTAGCCAATGATCCAGCATTTGCTACCACTTGGCTCCAAACCAACATCATTCCATTCGCTTCATCTGTCAATTTTCGATGCATATCCGTTGGAAATGAAATGGTTCCAAGCCAAAATGCTAGCAGCATACTCCCTGCCATGCAAAATCTGAGAACTGCACTAATTGCGGCCAACCTCAATATCCCCATATCAACAGTAGTGTTCCAAAATGTACTGGCATCACCATTTCCACCATCTGCAGGAACATGGCATCCTGATGCAGCCTCAATTATGGTTCCTCTGGTACAATATATGCAAGCCAATGGCTACCCCCTTCTTTACAATGCCTATCCATATTTCGCCTACCGCGACAACCCGAATGACATTAGGCTAGACTATGCATTGATGAGTACCTCAGAGGTTATTGTAACGGATGGGGCTCTAGGGTACACAAATTTGCTTGATGCTTCCCTAGATGCTCTCTATTGGGCACTTGAGAAGGTAGGGGCACCAAATGTTGAGATTGTTGTGGCTGAAACAGGGTGGCCATCAGAAGGAGAAGGACATGATCCAGCAACTATTGATAATGCCAGAATATATAACAGCAATTTGATCAAGCATGGGCAATTTGGAACACCAAAGAGACCAGGAAAGGGATTGGAGGCATACATATTTGCTTTGTTCAATGAAGATCTCAAGCCTAAGGGGTCTGAAGCTCATTGGGGATTGTTTTATCCAGACATGAGTGAAGTTTACCATGTTGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

338

Amino Acids

36.95

Weight (kDa)

4.89

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 751
AccI GTMKAC 1 cut(s) 100
AccII CGCG 1 cut(s) 612
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 2 cut(s) 431, 610
AclWI GGATC 3 cut(s) 176, 269, 806
AcoI YGGCCR 2 cut(s) 432, 788
AcsI RAATTY 2 cut(s) 168, 697
AcuI CTGAAG 1 cut(s) 975
AfaI GTAC 5 cut(s) 241, 477, 549, 655, 692
AfiI CCNNNNNNNGG 3 cut(s) 503, 797, 896
AgsI TTSAA 3 cut(s) 12, 164, 928
AjnI CCWGG 2 cut(s) 152, 889
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
AluBI AGCT 5 cut(s) 32, 63, 74, 142, 959
AluI AGCT 5 cut(s) 32, 63, 74, 142, 959
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 880
AlwI GGATC 3 cut(s) 176, 269, 806
AlwNI CAGNNNCTG 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 2 cut(s) 432, 788
ApeKI GCWGC 3 cut(s) 4, 387, 524
ApoI RAATTY 2 cut(s) 168, 697
Asp700I GAANNNNTTC 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 119, 477
AsuNHI GCTAGC 1 cut(s) 383
AxyI CCTNAGG 1 cut(s) 945
BaeGI GKGCMC 2 cut(s) 736, 754
BalI TGGCCA 1 cut(s) 790
BanI GGYRCC 1 cut(s) 751
BanII GRGCYC 2 cut(s) 76, 685
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 16, 399, 536
BccI CCATC 3 cut(s) 505, 671, 799
BciT130I CCWGG 2 cut(s) 154, 891
BclI TGATCA 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 880
BfaI CTAG 5 cut(s) 266, 384, 635, 686, 716
BfmI CTRYAG 3 cut(s) 24, 200, 501
BglII AGATCT 1 cut(s) 934
BisI GCNGC 4 cut(s) 5, 388, 432, 525
BlsI GCNGC 4 cut(s) 6, 389, 433, 526
Bme1390I CCNGG 2 cut(s) 154, 891
BmiI GGNNCC 4 cut(s) 299, 369, 540, 753
BmrFI CCNGG 2 cut(s) 154, 891
BmsI GCATC 6 cut(s) 332, 491, 511, 523, 697, 709
BmtI GCTAGC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 758, 923
BsaBI GATNNNNATC 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 880
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 3 cut(s) 503, 797, 896
Bse1I ACTGG 1 cut(s) 483
Bse21I CCTNAGG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 2 cut(s) 154, 891
BseGI GGATG 2 cut(s) 514, 682
BseJI GATNNNNATC 1 cut(s) 346
BseLI CCNNNNNNNGG 3 cut(s) 503, 797, 896
BseMII CTCAG 3 cut(s) 42, 404, 672
BseNI ACTGG 1 cut(s) 483
BseSI GKGCMC 2 cut(s) 736, 754
BseXI GCAGC 3 cut(s) 16, 399, 536
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 2 cut(s) 434, 790
BshNI GGYRCC 1 cut(s) 751
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 503, 797, 896
BsmAI GTCTC 1 cut(s) 880
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 2 cut(s) 434, 790
Bso31I GGTCTC 1 cut(s) 880
Bsp1286I GDGCHC 4 cut(s) 76, 685, 736, 754
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 5 cut(s) 181, 274, 811, 855, 934
BspACI CCGC 2 cut(s) 431, 610
BspANI GGCC 2 cut(s) 434, 790
BspCNI CTCAG 3 cut(s) 43, 405, 671
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 4 cut(s) 299, 369, 540, 753
BspMAI CTGCAG 2 cut(s) 204, 505
BspOI GCTAGC 1 cut(s) 387
BspPI GGATC 3 cut(s) 176, 269, 806
BspT107I GGYRCC 1 cut(s) 751
BspTNI GGTCTC 1 cut(s) 880
BsrI ACTGG 1 cut(s) 483
BssMI GATC 5 cut(s) 181, 274, 811, 855, 934
Bst2UI CCWGG 2 cut(s) 154, 891
Bst4CI ACNGT 1 cut(s) 460
BstAPI GCANNNNNTGC 2 cut(s) 208, 428
BstC8I GCNNGC 3 cut(s) 204, 385, 561
BstDEI CTNAG 4 cut(s) 51, 413, 658, 945
BstF5I GGATG 2 cut(s) 514, 682
BstFNI CGCG 1 cut(s) 612
BstKTI GATC 5 cut(s) 184, 277, 814, 858, 937
BstMAI GTCTC 1 cut(s) 880
BstMBI GATC 5 cut(s) 181, 274, 811, 855, 934
BstMWI GCNNNNNNNGC 2 cut(s) 208, 428
BstNI CCWGG 2 cut(s) 154, 891
BstSCI CCNGG 2 cut(s) 152, 889
BstSFI CTRYAG 3 cut(s) 24, 200, 501
BstSLI GKGCMC 2 cut(s) 736, 754
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 3 cut(s) 16, 399, 536
BstX2I RGATCY 1 cut(s) 934
BstYI RGATCY 1 cut(s) 934
Bsu36I CCTNAGG 1 cut(s) 945
BsuRI GGCC 2 cut(s) 434, 790
BtsCI GGATG 2 cut(s) 514, 682
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 206, 242
Cac8I GCNNGC 3 cut(s) 204, 385, 561
CaiI CAGNNNCTG 1 cut(s) 208
Csp6I GTAC 5 cut(s) 240, 476, 548, 654, 691
CviAII CATG 7 cut(s) 77, 403, 510, 809, 863, 985, 1001
CviQI GTAC 5 cut(s) 240, 476, 548, 654, 691
DdeI CTNAG 4 cut(s) 51, 413, 658, 945
DpnI GATC 5 cut(s) 183, 276, 813, 857, 936
DpnII GATC 5 cut(s) 181, 274, 811, 855, 934
EaeI YGGCCR 2 cut(s) 432, 788
Ecl136II GAGCTC 1 cut(s) 74
Eco24I GRGCYC 2 cut(s) 76, 685
Eco31I GGTCTC 1 cut(s) 880
Eco53kI GAGCTC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 975
Eco81I CCTNAGG 1 cut(s) 945
EcoICRI GAGCTC 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 168
EcoRII CCWGG 2 cut(s) 152, 889
EcoT22I ATGCAT 2 cut(s) 347, 646
EcoT38I GRGCYC 2 cut(s) 76, 685
FaeI CATG 7 cut(s) 80, 406, 513, 812, 866, 988, 1004
FaqI GGGAC 1 cut(s) 242
FatI CATG 7 cut(s) 76, 402, 509, 808, 862, 984, 1000
FbaI TGATCA 1 cut(s) 855
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 5, 388, 432, 525
FokI GGATG 2 cut(s) 501, 689
FriOI GRGCYC 2 cut(s) 76, 685
Fsp4HI GCNGC 4 cut(s) 5, 388, 432, 525
FspBI CTAG 5 cut(s) 266, 384, 635, 686, 716
GluI GCNGC 4 cut(s) 5, 388, 432, 525
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 2 cut(s) 434, 790
HapII CCGG 1 cut(s) 125
Hin1II CATG 7 cut(s) 80, 406, 513, 812, 866, 988, 1004
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 119, 477
Hpy166II GTNNAC 4 cut(s) 101, 242, 693, 997
Hpy188I TCNGA 4 cut(s) 414, 661, 796, 955
Hpy188III TCNNGA 4 cut(s) 125, 219, 518, 980
Hpy8I GTNNAC 4 cut(s) 101, 242, 693, 997
HpyAV CCTTC 5 cut(s) 125, 587, 736, 791, 797
HpyCH4III ACNGT 1 cut(s) 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 428
HpyF3I CTNAG 4 cut(s) 51, 413, 658, 945
Hsp92II CATG 7 cut(s) 80, 406, 513, 812, 866, 988, 1004
Kpn2I TCCGGA 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 5 cut(s) 181, 274, 811, 855, 934
LmnI GCTCC 2 cut(s) 71, 303
Lsp1109I GCAGC 3 cut(s) 16, 399, 536
LweI GCATC 6 cut(s) 332, 491, 511, 523, 697, 709
MaeI CTAG 5 cut(s) 266, 384, 635, 686, 716
MaeIII GTNAC 3 cut(s) 46, 107, 670
MalI GATC 5 cut(s) 183, 276, 813, 857, 936
MboI GATC 5 cut(s) 181, 274, 811, 855, 934
MboII GAAGA 1 cut(s) 944
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 4 cut(s) 76, 685, 736, 754
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 8 cut(s) 91, 168, 334, 426, 531, 697, 850, 869
MluNI TGGCCA 1 cut(s) 790
MmeI TCCRAC 2 cut(s) 143, 334
MnlI CCTC 6 cut(s) 449, 538, 552, 655, 667, 898
Mox20I TGGCCA 1 cut(s) 790
Mph1103I ATGCAT 2 cut(s) 347, 646
MroI TCCGGA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 366
MscI TGGCCA 1 cut(s) 790
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 790
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 154, 891
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 2 cut(s) 154, 891
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 208, 428
NdeII GATC 5 cut(s) 181, 274, 811, 855, 934
NheI GCTAGC 1 cut(s) 383
NlaIII CATG 7 cut(s) 80, 406, 513, 812, 866, 988, 1004
NlaIV GGNNCC 4 cut(s) 299, 369, 540, 753
NmuCI GTSAC 2 cut(s) 46, 107
NsiI ATGCAT 2 cut(s) 347, 646
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 152
PkrI GCNGC 4 cut(s) 6, 389, 433, 526
Psp124BI GAGCTC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 152, 889
PspGI CCWGG 2 cut(s) 152, 889
PspN4I GGNNCC 4 cut(s) 299, 369, 540, 753
PstI CTGCAG 2 cut(s) 204, 505
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 934
RsaI GTAC 5 cut(s) 241, 477, 549, 655, 692
RsaNI GTAC 5 cut(s) 240, 476, 548, 654, 691
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 76
SatI GCNGC 4 cut(s) 5, 388, 432, 525
Sau3AI GATC 5 cut(s) 181, 274, 811, 855, 934
ScrFI CCNGG 2 cut(s) 154, 891
SduI GDGCHC 4 cut(s) 76, 685, 736, 754
SfaNI GCATC 6 cut(s) 332, 491, 511, 523, 697, 709
SfcI CTRYAG 3 cut(s) 24, 200, 501
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 737, 938
SmoI CTYRAG 2 cut(s) 737, 938
Sse9I AATT 8 cut(s) 91, 168, 334, 426, 531, 697, 850, 869
SsiI CCGC 2 cut(s) 431, 610
SspMI CTAG 5 cut(s) 266, 384, 635, 686, 716
SstI GAGCTC 1 cut(s) 76
StyD4I CCNGG 2 cut(s) 152, 889
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 180, 340
TasI AATT 8 cut(s) 91, 168, 334, 426, 531, 697, 850, 869
TatI WGTACW 1 cut(s) 475
TauI GCSGC 1 cut(s) 434
TscAI CASTG 2 cut(s) 213, 249
TseFI GTSAC 2 cut(s) 46, 107
TseI GCWGC 3 cut(s) 4, 387, 524
Tsp45I GTSAC 2 cut(s) 46, 107
TspDTI ATGAA 3 cut(s) 315, 375, 945
TspGWI ACGGA 2 cut(s) 340, 689
TspRI CASTG 2 cut(s) 213, 249
XapI RAATTY 2 cut(s) 168, 697
XmiI GTMKAC 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 5 cut(s) 266, 384, 635, 686, 716
Zsp2I ATGCAT 2 cut(s) 347, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.