Prupe.7G153800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
16389075 .. 16390018
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G153800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 396 bp
ATGATTAATGCATTCAAAACATTCAGAACCCAATCAGCAGCTTTGACATTCTCGACGCCTCTGCCGCCGCCGCCAGGCTTGGGACGGAAAGCTTCCGGGGTCCGATTCAAACAGACCACAACCCTGCGCTCCAGCGAGTCCGATAGTGAGCACAACATGGACAAGCCAGAGCCTAACCCTACTGAGAAAACTAGGGATAGGGACAGTTTGTCACATTCATTTGGGGAGGGGTATGCGACGAGGTGCGATGACGATGGGTTCGGAGTGGTATATGGGGGAATCCGGTCAGTTCCAAAGACGGAGCAGGATGACAACCACCCTGCTGTGGACAAGTCACAGGGAAGTGAGGTGCAGGAGAAGGAGAAACCGCGACACCAGACAAATGCTTCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.4

Weight (kDa)

6.42

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 370
AciI CCGC 4 cut(s) 65, 68, 71, 368
AcyI GRCGYC 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 74, 80, 325
AgsI TTSAA 2 cut(s) 16, 109
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 41, 92
AluI AGCT 2 cut(s) 41, 92
Alw21I GWGCWC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 38
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 6
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 248
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 97
BfaI CTAG 1 cut(s) 192
BisI GCNGC 4 cut(s) 39, 65, 68, 71
BlsI GCNGC 4 cut(s) 40, 66, 69, 72
Bme1390I CCNGG 2 cut(s) 75, 97
Bme18I GGWCC 1 cut(s) 100
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 75, 97
BpmI CTGGAG 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 80, 325
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 313, 389
BseLI CCNNNNNNNGG 3 cut(s) 74, 80, 325
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 96, 283
BslFI GGGAC 2 cut(s) 96, 215
BslI CCNNNNNNNGG 3 cut(s) 74, 80, 325
BsmFI GGGAC 2 cut(s) 96, 215
BsmI GAATGC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 153
BspACI CCGC 4 cut(s) 65, 68, 71, 368
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 96
BssNI GRCGYC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 313, 389
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 64, 70
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 95
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 313, 389
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 64
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 41, 78, 92, 166, 172
CviKI_1 RGCY 5 cut(s) 41, 78, 92, 166, 172
DdeI CTNAG 1 cut(s) 183
DriI GACNNNNNGTC 1 cut(s) 208
Eam1105I GACNNNNNGTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 158, 234, 271, 273
FaqI GGGAC 2 cut(s) 96, 215
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 39, 65, 68, 71
FokI GGATG 2 cut(s) 320, 376
Fsp4HI GCNGC 4 cut(s) 39, 65, 68, 71
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 128
GluI GCNGC 4 cut(s) 39, 65, 68, 71
GsuI CTGGAG 1 cut(s) 115
HapII CCGG 2 cut(s) 96, 283
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 3 cut(s) 105, 137, 279
HpaII CCGG 2 cut(s) 96, 283
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 26, 104, 142, 263
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 2 cut(s) 58, 241
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 11, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 70
HpyF3I CTNAG 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 134, 301
Lsp1109I GCAGC 1 cut(s) 50
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 210, 333
MhlI GDGCHC 1 cut(s) 153
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 4 cut(s) 69, 220, 234, 340
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 1 cut(s) 6
MspI CCGG 2 cut(s) 96, 283
MspR9I CCNGG 2 cut(s) 75, 97
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 64, 70
NciI CCSGG 1 cut(s) 97
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 2 cut(s) 210, 333
NsiI ATGCAT 1 cut(s) 13
PctI GAATGC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 105, 279
PkrI GCNGC 4 cut(s) 40, 66, 69, 72
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 4 cut(s) 39, 65, 68, 71
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 75, 97
SduI GDGCHC 1 cut(s) 153
SetI ASST 4 cut(s) 43, 94, 245, 351
SinI GGWCC 1 cut(s) 100
SsiI CCGC 4 cut(s) 65, 68, 71, 368
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 73, 95
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 53
TauI GCSGC 3 cut(s) 67, 70, 73
TfiI GAWTC 2 cut(s) 105, 279
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseFI GTSAC 2 cut(s) 210, 333
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 210, 333
TspDTI ATGAA 2 cut(s) 207, 378
TspGWI ACGGA 2 cut(s) 100, 314
VpaK11BI GGWCC 1 cut(s) 100
VspI ATTAAT 1 cut(s) 6
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.