Prupe.7G159300_v2.0.a1

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
16639640 .. 16640808
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G159300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1122 bp
ATGGTTGACTATTACATGCCCACGGCGGCATCCACGTCCGTATGGTTTTCCGCCTACGCCTCTTTTGCTGGGTTCATGATGCTGGTCCGCTCCATGGCCACCGAACTCATGCCCCAACCACTCCGCTCATACATGTACTCGGTCTTCAATTACCCTTTTGCCCCTTTCTTCTCCCGCGAGGTCACCCTCCTGTTCGACGAGCACTACGGCATGACCTATAACGAACTCTACGAAGCCATAGAGGTCTACCTGCGAACGAAAATTGGCCCCTCCGTGAGGTGCCTCCGCGTCAGCAAATTGCCCCGTATGAAGGCGATCAACGTGTCGATCGACAGGGACGAGGAAGTCGATGACACCTTCGACGGCGTTAAGATGAAGTGGTGTTACGTGGTGACCAAAGTCGAGAAGCCCAGTAACGGCAGTACGGATGCAAAGGAAAAGGAAAAGCACCGGTTCGAGCTGACTTTCCACAAGAAGCACAAGGACAAAGTGATCGACTACTACTTGCCCTACGTGCTGGCTCGGGCCAAAACCCTAAAAGAAGAGCAGAAAACGCTCAAGCTTTACACTAACCTAGATTATTGGTACGGCGACGACGACGAGGAGAATGACAGCTGGGGCTCCATAAATCTGGATCACCCGTGCACGTTTGACAAGTTGGCCATGGATCCGGAGCTCAAGAGAATGATCATAGAGGATTTGGAGAGGTTTGTGGGGAGGAGGGAGTTTTATAGCAAGGTGGGGAACGCTTGGAAGAGAGATGGTTTGCGGTCAAGCTGCGGTGACGAAAGAATCATAATCTTCATCACAAACTGCAAGGAAATGCTTGACCCTGCCTTACTGCGTCCTGGTCGAATGGACGTCCACATCCACATGTCCTATTGCACTCCAAGCGGTTTCAGGGTCCTGGCCTGTAACTACCTTGGTATTCGCGACGGTGAAGATCACCGCCTGTTTGGAGAAATCGAACGGTTGATAGAGAGCACAGAGGTCACTCCTGCACAGGTTGCTGAGGAACTCATGAAGAGTGATGACGCTGAAGTGTCGCTTGGAGCACTTGTCAATTTCCTCAAACATAACCAGGCCGAGAGGGAGAGAAAAGAAGGAGGAAGTAGAGGCTAA

Protein Analysis

374

Amino Acids

43.37

Weight (kDa)

5.72

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AatII GACGTC 1 cut(s) 864
Acc36I ACCTGC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 279
AccBSI CCGCTC 2 cut(s) 90, 126
AccI GTMKAC 1 cut(s) 246
AccII CGCG 3 cut(s) 177, 288, 933
AccIII TCCGGA 1 cut(s) 670
AclWI GGATC 3 cut(s) 642, 662, 675
AcoI YGGCCR 2 cut(s) 96, 660
AcuI CTGAAG 1 cut(s) 1059
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 3 cut(s) 137, 424, 587
AfiI CCNNNNNNNGG 4 cut(s) 94, 276, 310, 416
AflIII ACRYGT 3 cut(s) 132, 321, 873
AgeI ACCGGT 1 cut(s) 450
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 3 cut(s) 847, 906, 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 1032, 1064
AluBI AGCT 5 cut(s) 460, 562, 615, 676, 777
AluI AGCT 5 cut(s) 460, 562, 615, 676, 777
Alw21I GWGCWC 5 cut(s) 204, 647, 678, 986, 1057
Alw44I GTGCAC 1 cut(s) 643
AlwI GGATC 3 cut(s) 642, 662, 675
Ama87I CYCGRG 1 cut(s) 522
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 6 cut(s) 96, 265, 525, 660, 909, 1083
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 1 cut(s) 777
AsiGI ACCGGT 1 cut(s) 450
AspS9I GGNCC 4 cut(s) 85, 266, 525, 904
AsuHPI GGTGA 6 cut(s) 175, 403, 629, 794, 938, 950
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 2 cut(s) 85, 904
BaeGI GKGCMC 1 cut(s) 647
BalI TGGCCA 2 cut(s) 98, 662
BamHI GGATCC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 279
BanII GRGCYC 2 cut(s) 623, 678
BarI GAAGNNNNNNTAC 4 cut(s) 128, 160, 368, 400
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 5 cut(s) 204, 647, 678, 986, 1057
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 1 cut(s) 764
BccI CCATC 1 cut(s) 755
BceAI ACGGC 5 cut(s) 39, 223, 379, 433, 604
BciT130I CCWGG 3 cut(s) 849, 908, 1082
BclI TGATCA 1 cut(s) 687
BfaI CTAG 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 2 cut(s) 27, 778
BlsI GCNGC 2 cut(s) 28, 779
Bme1390I CCNGG 3 cut(s) 849, 908, 1082
Bme18I GGWCC 2 cut(s) 85, 904
BmeT110I CYCGRG 1 cut(s) 522
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 4 cut(s) 85, 266, 525, 904
BmiI GGNNCC 5 cut(s) 268, 281, 622, 669, 905
BmrFI CCNGG 3 cut(s) 849, 908, 1082
BmrI ACTGGG 1 cut(s) 405
BmsI GCATC 3 cut(s) 38, 69, 418
BmuI ACTGGG 1 cut(s) 405
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 2 cut(s) 542, 662
BsaAI YACGTR 2 cut(s) 388, 514
BsaHI GRCGYC 1 cut(s) 861
BsaJI CCNNGG 4 cut(s) 21, 93, 663, 922
BsaWI WCCGGW 2 cut(s) 450, 670
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 276, 310, 416
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 3 cut(s) 849, 908, 1082
BseDI CCNNGG 4 cut(s) 21, 93, 663, 922
BseGI GGATG 3 cut(s) 29, 433, 867
BseLI CCNNNNNNNGG 4 cut(s) 94, 276, 310, 416
BseMII CTCAG 1 cut(s) 1002
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 617, 733
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 1 cut(s) 764
BseYI CCCAGC 2 cut(s) 68, 615
BsgI GTGCAG 1 cut(s) 984
Bsh1236I CGCG 3 cut(s) 177, 288, 933
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 6 cut(s) 98, 267, 527, 662, 911, 1085
BshNI GGYRCC 1 cut(s) 279
BshTI ACCGGT 1 cut(s) 450
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 5 cut(s) 204, 647, 678, 986, 1057
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 2 cut(s) 451, 671
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 4 cut(s) 94, 276, 310, 416
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 6 cut(s) 98, 267, 527, 662, 911, 1085
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 6 cut(s) 204, 623, 647, 678, 986, 1057
Bsp13I TCCGGA 1 cut(s) 670
Bsp143I GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
Bsp19I CCATGG 2 cut(s) 93, 663
Bsp68I TCGCGA 1 cut(s) 933
BspANI GGCC 6 cut(s) 98, 267, 527, 662, 911, 1085
BspCNI CTCAG 1 cut(s) 1003
BspEI TCCGGA 1 cut(s) 670
BspFNI CGCG 3 cut(s) 177, 288, 933
BspHI TCATGA 2 cut(s) 75, 1020
BspLI GGNNCC 5 cut(s) 268, 281, 622, 669, 905
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 3 cut(s) 642, 662, 675
BspQI GCTCTTC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 279
BsrBI CCGCTC 2 cut(s) 90, 126
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 4 cut(s) 21, 93, 663, 922
BssMI GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 3 cut(s) 93, 663, 922
Bst2UI CCWGG 3 cut(s) 849, 908, 1082
Bst4CI ACNGT 2 cut(s) 938, 972
Bst6I CTCTTC 3 cut(s) 537, 749, 1019
BstACI GRCGYC 1 cut(s) 861
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstBAI YACGTR 2 cut(s) 388, 514
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 1 cut(s) 1011
BstDSI CCRYGG 3 cut(s) 21, 93, 663
BstEII GGTNACC 2 cut(s) 181, 391
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 3 cut(s) 29, 433, 867
BstFNI CGCG 3 cut(s) 177, 288, 933
BstKTI GATC 7 cut(s) 318, 330, 495, 637, 670, 690, 946
BstMBI GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 5 cut(s) 65, 514, 553, 891, 1007
BstNI CCWGG 3 cut(s) 849, 908, 1082
BstNSI RCATGY 3 cut(s) 19, 136, 877
BstPAI GACNNNNGTC 1 cut(s) 398
BstPI GGTNACC 2 cut(s) 181, 391
BstSCI CCNGG 3 cut(s) 847, 906, 1080
BstSLI GKGCMC 1 cut(s) 647
BstUI CGCG 3 cut(s) 177, 288, 933
BstV1I GCAGC 1 cut(s) 764
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 667
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 1 cut(s) 667
BsuRI GGCC 6 cut(s) 98, 267, 527, 662, 911, 1085
BtgI CCRYGG 3 cut(s) 21, 93, 663
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 3 cut(s) 29, 433, 867
BtuMI TCGCGA 1 cut(s) 933
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 519
CciI TCATGA 2 cut(s) 75, 1020
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 4 cut(s) 85, 266, 525, 904
CseI GACGC 3 cut(s) 277, 833, 1043
Csp6I GTAC 3 cut(s) 136, 423, 586
CspAI ACCGGT 1 cut(s) 450
CviAII CATG 9 cut(s) 16, 76, 94, 109, 133, 211, 664, 874, 1021
CviQI GTAC 3 cut(s) 136, 423, 586
DdeI CTNAG 1 cut(s) 1011
DpnI GATC 7 cut(s) 317, 329, 494, 636, 669, 689, 945
DpnII GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 96, 660
Eam1104I CTCTTC 3 cut(s) 537, 749, 1019
EarI CTCTTC 3 cut(s) 537, 749, 1019
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 676
Eco130I CCWWGG 3 cut(s) 93, 663, 922
Eco24I GRGCYC 2 cut(s) 623, 678
Eco47I GGWCC 2 cut(s) 85, 904
Eco53kI GAGCTC 1 cut(s) 676
Eco57I CTGAAG 1 cut(s) 1059
Eco88I CYCGRG 1 cut(s) 522
Eco91I GGTNACC 2 cut(s) 181, 391
EcoICRI GAGCTC 1 cut(s) 676
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 904
EcoO65I GGTNACC 2 cut(s) 181, 391
EcoRII CCWGG 3 cut(s) 847, 906, 1080
EcoT14I CCWWGG 3 cut(s) 93, 663, 922
EcoT38I GRGCYC 2 cut(s) 623, 678
ErhI CCWWGG 3 cut(s) 93, 663, 922
FaeI CATG 9 cut(s) 19, 79, 97, 112, 136, 214, 667, 877, 1024
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 1 cut(s) 350
FatI CATG 9 cut(s) 15, 75, 93, 108, 132, 210, 663, 873, 1020
FauI CCCGC 1 cut(s) 182
FbaI TGATCA 1 cut(s) 687
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 27, 778
FokI GGATG 3 cut(s) 16, 440, 854
FriOI GRGCYC 2 cut(s) 623, 678
Fsp4HI GCNGC 2 cut(s) 27, 778
FspBI CTAG 1 cut(s) 575
GluI GCNGC 2 cut(s) 27, 778
GsaI CCCAGC 2 cut(s) 72, 619
HaeIII GGCC 6 cut(s) 98, 267, 527, 662, 911, 1085
HapII CCGG 2 cut(s) 451, 671
HgaI GACGC 3 cut(s) 277, 833, 1043
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 9 cut(s) 19, 79, 97, 112, 136, 214, 667, 877, 1024
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 1 cut(s) 792
HpaII CCGG 2 cut(s) 451, 671
HphI GGTGA 6 cut(s) 175, 403, 629, 794, 938, 950
Hpy166II GTNNAC 4 cut(s) 7, 247, 645, 865
Hpy188III TCNNGA 7 cut(s) 76, 403, 632, 671, 679, 932, 1021
Hpy8I GTNNAC 4 cut(s) 7, 247, 645, 865
Hpy99I CGWCG 6 cut(s) 200, 365, 596, 599, 602, 938
HpyAV CCTTC 3 cut(s) 304, 367, 1097
HpyCH4III ACNGT 2 cut(s) 938, 972
HpyCH4IV ACGT 6 cut(s) 35, 321, 387, 513, 647, 861
HpyCH4V TGCA 5 cut(s) 431, 645, 816, 885, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 514, 553, 891, 1007
HpyF3I CTNAG 1 cut(s) 1011
HpySE526I ACGT 6 cut(s) 35, 321, 387, 513, 647, 861
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 9 cut(s) 19, 79, 97, 112, 136, 214, 667, 877, 1024
Kpn2I TCCGGA 1 cut(s) 670
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 4 cut(s) 95, 626, 673, 1052
Lsp1109I GCAGC 1 cut(s) 764
LweI GCATC 3 cut(s) 38, 69, 418
MaeI CTAG 1 cut(s) 575
MaeII ACGT 6 cut(s) 35, 321, 387, 513, 647, 861
MaeIII GTNAC 7 cut(s) 181, 383, 391, 413, 782, 914, 991
MalI GATC 7 cut(s) 317, 329, 494, 636, 669, 689, 945
MbiI CCGCTC 2 cut(s) 90, 126
MboI GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
MboII GAAGA 7 cut(s) 136, 160, 554, 766, 793, 953, 1036
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 6 cut(s) 204, 623, 647, 678, 986, 1057
MlsI TGGCCA 2 cut(s) 98, 662
MluCI AATT 4 cut(s) 148, 261, 296, 1063
MluNI TGGCCA 2 cut(s) 98, 662
Mox20I TGGCCA 2 cut(s) 98, 662
MroI TCCGGA 1 cut(s) 670
MscI TGGCCA 2 cut(s) 98, 662
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 2 cut(s) 98, 662
MspA1I CMGCKG 1 cut(s) 615
MspI CCGG 2 cut(s) 451, 671
MspR9I CCNGG 3 cut(s) 849, 908, 1082
MvaI CCWGG 3 cut(s) 849, 908, 1082
MvnI CGCG 3 cut(s) 177, 288, 933
MwoI GCNNNNNNNGC 5 cut(s) 65, 514, 553, 891, 1007
NcoI CCATGG 2 cut(s) 93, 663
NdeII GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
NlaIII CATG 9 cut(s) 19, 79, 97, 112, 136, 214, 667, 877, 1024
NlaIV GGNNCC 5 cut(s) 268, 281, 622, 669, 905
NmeAIII GCCGAG 1 cut(s) 1111
NmuCI GTSAC 4 cut(s) 181, 391, 782, 991
NruI TCGCGA 1 cut(s) 933
NspI RCATGY 3 cut(s) 19, 136, 877
PagI TCATGA 2 cut(s) 75, 1020
PciI ACATGT 2 cut(s) 132, 873
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 5 cut(s) 228, 327, 336, 345, 594
PfeI GAWTC 1 cut(s) 792
PinAI ACCGGT 1 cut(s) 450
PkrI GCNGC 2 cut(s) 28, 779
Ple19I CGATCG 1 cut(s) 330
Ppu21I YACGTR 2 cut(s) 388, 514
PpuMI RGGWCCY 1 cut(s) 904
PscI ACATGT 2 cut(s) 132, 873
PshAI GACNNNNGTC 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 678
Psp5II RGGWCCY 1 cut(s) 904
Psp6I CCWGG 3 cut(s) 847, 906, 1080
PspEI GGTNACC 2 cut(s) 181, 391
PspFI CCCAGC 2 cut(s) 68, 615
PspGI CCWGG 3 cut(s) 847, 906, 1080
PspN4I GGNNCC 5 cut(s) 268, 281, 622, 669, 905
PspPI GGNCC 4 cut(s) 85, 266, 525, 904
PspPPI RGGWCCY 1 cut(s) 904
PsuI RGATCY 1 cut(s) 667
PvuI CGATCG 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 615
RruI TCGCGA 1 cut(s) 933
RsaI GTAC 3 cut(s) 137, 424, 587
RsaNI GTAC 3 cut(s) 136, 423, 586
RseI CAYNNNNRTG 1 cut(s) 872
SacI GAGCTC 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 2 cut(s) 27, 778
Sau3AI GATC 7 cut(s) 315, 327, 492, 634, 667, 687, 943
Sau96I GGNCC 4 cut(s) 85, 266, 525, 904
ScrFI CCNGG 3 cut(s) 849, 908, 1082
SduI GDGCHC 6 cut(s) 204, 623, 647, 678, 986, 1057
SfaNI GCATC 3 cut(s) 38, 69, 418
SinI GGWCC 2 cut(s) 85, 904
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 2 cut(s) 557, 677
SmoI CTYRAG 2 cut(s) 557, 677
Sse9I AATT 4 cut(s) 148, 261, 296, 1063
SspMI CTAG 1 cut(s) 575
SstI GAGCTC 1 cut(s) 678
StyD4I CCNGG 3 cut(s) 847, 906, 1080
StyI CCWWGG 3 cut(s) 93, 663, 922
TaaI ACNGT 2 cut(s) 938, 972
TaiI ACGT 6 cut(s) 38, 324, 390, 516, 650, 864
TaqII GACCGA 1 cut(s) 130
TasI AATT 4 cut(s) 148, 261, 296, 1063
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 792
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 4 cut(s) 181, 391, 782, 991
TseI GCWGC 1 cut(s) 777
Tsp45I GTSAC 4 cut(s) 181, 391, 782, 991
TspDTI ATGAA 5 cut(s) 64, 323, 389, 793, 1037
TspGWI ACGGA 3 cut(s) 28, 262, 440
VneI GTGCAC 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 85, 904
XagI CCTNNNNNAGG 1 cut(s) 274
XceI RCATGY 3 cut(s) 19, 136, 877
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 575
ZraI GACGTC 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.