Prupe.7G162100_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
16773249 .. 16774422
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G162100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1077 bp
ATGGCTTCTATTGATCATGATGATGAAGACATGGCTAAAGCTCTTGCTTACATAGAGCACATGCTTTTGGATTATGATGATGAGTTGGAAGAAGATGTGCATGCAGAAGAAAATGAGCAACTAGCAGTGAAAATCCAAGAATTTGAAGCATTCTTACTAGGCACAGATGCCATTGCTGCAGAAGAACAAGAACAACCACAACCAGAACAAGGTTCCTTCTTCTATGGAAACCATGCTGTCCCGCGAGTCCCGAGCCTTCAAGAACCTGCTGCCCTACATGCCCAAGAAGTCATTGCAGCACAACAAGGCATGCCTCTACAACAACAGGAACTAGGACTGGATTGGTTCTGTGGAAACTATGTACCTCCTCGTCACTTCATTCCATTTCACGAACTTTGTTCTCCTCATCACCTAGGTTCATACTATGGAATTCACAACTTTGTCCCTCATCATCATCTCCTACCATTCCCAAGCTTCCAACCCTCGATTCAATTTCAAGAACCTGCAGCCTCACATGCCCTGCAAGCCCAAGAAGCCATTGCTGCAGCACAAGGCATGCCTCAACTACCACAACAACTAGAACTTGGATCTTTCCATGGAATTGGAACCTATGTGCCTCATTATTTCCCAGCAATCCCTAGTCTCCAACGCTCAATTCAATTTCAAGAACAACCAGAACTAGACCTGGGTTCATTCGATGGAACTGGCAACTATGTCCCTCCTGCTCTCCCACCAGTCCCAAGCCTCCGAAACTTGATTCAAATATGCAGCAAGCCTTTTCAGAAGCATGTCTGGCCATTGTTGAATGGCGATGAAGATCTTATACAAGGCATCTGGCTCAAAATGTATGACATTGCTGGAGTTCAAAAAATTCATATGCTTACTGGTCCAGATTGGCAATATTTTGTCCGACGCCATTGCCTGGTATGGTACAAAGATGTTACCCTGTGGGCGTTCAGGAATGCCCAAACTGGAAAGCTATGTTTTGTGATCACTTCGGGAAGGCTGCCGTTTTTTTTAAAACCCTCAGACATTCTTCAAGACCAAGACAGAGTTGAGATATGGACTGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

359

Amino Acids

40.63

Weight (kDa)

4.88

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 274, 511
AccB7I CCANNNNNTGG 1 cut(s) 922
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 794
AcsI RAATTY 3 cut(s) 140, 429, 870
AcyI GRCGYC 1 cut(s) 913
AfaI GTAC 2 cut(s) 363, 932
AfiI CCNNNNNNNGG 2 cut(s) 209, 922
AjnI CCWGG 2 cut(s) 684, 921
AjuI GAANNNNNNNTTGG 4 cut(s) 471, 503, 639, 671
AluBI AGCT 3 cut(s) 41, 474, 979
AluI AGCT 3 cut(s) 41, 474, 979
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 1 cut(s) 794
ApeKI GCWGC 9 cut(s) 176, 269, 296, 506, 542, 545, 768, 1006, 1070
ApoI RAATTY 3 cut(s) 140, 429, 870
AspA2I CCTAGG 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 887
AsuHPI GGTGA 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 1 cut(s) 887
AvrII CCTAGG 1 cut(s) 412
BalI TGGCCA 1 cut(s) 796
BarI GAAGNNNNNNTAC 4 cut(s) 138, 170, 807, 839
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 8 cut(s) 163, 256, 308, 518, 529, 557, 780, 993
BccI CCATC 1 cut(s) 692
BceAI ACGGC 1 cut(s) 994
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciT130I CCWGG 2 cut(s) 686, 923
BclI TGATCA 2 cut(s) 13, 990
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 7 cut(s) 122, 158, 332, 413, 578, 639, 680
BfmI CTRYAG 4 cut(s) 177, 504, 543, 1068
BfuAI ACCTGC 2 cut(s) 274, 511
BglII AGATCT 1 cut(s) 817
BisI GCNGC 9 cut(s) 177, 270, 297, 507, 543, 546, 769, 1007, 1071
BlnI CCTAGG 1 cut(s) 412
BlsI GCNGC 9 cut(s) 178, 271, 298, 508, 544, 547, 770, 1008, 1072
Bme1390I CCNGG 2 cut(s) 686, 923
Bme18I GGWCC 1 cut(s) 887
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 887
BmiI GGNNCC 2 cut(s) 214, 607
BmrFI CCNGG 2 cut(s) 686, 923
BmsI GCATC 2 cut(s) 157, 840
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 913
BsaJI CCNNGG 3 cut(s) 412, 595, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 922
Bse1I ACTGG 5 cut(s) 342, 709, 734, 889, 976
Bse3DI GCAATG 5 cut(s) 171, 291, 537, 852, 916
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 2 cut(s) 686, 923
BseDI CCNNGG 3 cut(s) 412, 595, 685
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 2 cut(s) 209, 922
BseMI GCAATG 5 cut(s) 171, 291, 537, 852, 916
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 5 cut(s) 342, 709, 734, 889, 976
BseRI GAGGAG 2 cut(s) 357, 393
BseXI GCAGC 8 cut(s) 163, 256, 308, 518, 529, 557, 780, 993
BseYI CCCAGC 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 796
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 250
BslFI GGGAC 5 cut(s) 224, 233, 428, 701, 722
BslI CCNNNNNNNGG 2 cut(s) 209, 922
BsmAI GTCTC 1 cut(s) 647
BsmFI GGGAC 5 cut(s) 224, 233, 428, 701, 722
BsmI GAATGC 2 cut(s) 149, 967
BsnI GGCC 1 cut(s) 796
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 4 cut(s) 13, 587, 817, 990
Bsp19I CCATGG 1 cut(s) 595
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 796
BspCNI CTCAG 1 cut(s) 1040
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 214, 607
BspMAI CTGCAG 4 cut(s) 181, 508, 547, 1072
BspMI ACCTGC 2 cut(s) 274, 511
BspPI GGATC 1 cut(s) 595
BsrDI GCAATG 5 cut(s) 171, 291, 537, 852, 916
BsrI ACTGG 5 cut(s) 342, 709, 734, 889, 976
BssECI CCNNGG 3 cut(s) 412, 595, 685
BssMI GATC 4 cut(s) 13, 587, 817, 990
BssNI GRCGYC 1 cut(s) 913
BssT1I CCWWGG 2 cut(s) 412, 595
Bst2UI CCWGG 2 cut(s) 686, 923
BstACI GRCGYC 1 cut(s) 913
BstC8I GCNNGC 5 cut(s) 102, 311, 525, 557, 773
BstDEI CTNAG 1 cut(s) 1027
BstDSI CCRYGG 1 cut(s) 595
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 4 cut(s) 16, 590, 820, 993
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 4 cut(s) 13, 587, 817, 990
BstMWI GCNNNNNNNGC 7 cut(s) 176, 278, 515, 524, 533, 542, 793
BstNI CCWGG 2 cut(s) 686, 923
BstNSI RCATGY 7 cut(s) 64, 104, 281, 313, 518, 559, 791
BstSCI CCNGG 2 cut(s) 684, 921
BstSFI CTRYAG 4 cut(s) 177, 504, 543, 1068
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 8 cut(s) 163, 256, 308, 518, 529, 557, 780, 993
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 2 cut(s) 587, 817
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 2 cut(s) 587, 817
BsuRI GGCC 1 cut(s) 796
BtgI CCRYGG 1 cut(s) 595
BtgZI GCGATG 1 cut(s) 825
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 2 cut(s) 274, 511
Cac8I GCNNGC 5 cut(s) 102, 311, 525, 557, 773
CciI TCATGA 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 887
CseI GACGC 1 cut(s) 921
Csp6I GTAC 2 cut(s) 362, 931
CviQI GTAC 2 cut(s) 362, 931
DdeI CTNAG 1 cut(s) 1027
DpnI GATC 4 cut(s) 15, 589, 819, 992
DpnII GATC 4 cut(s) 13, 587, 817, 990
DraI TTTAAA 1 cut(s) 1020
EaeI YGGCCR 1 cut(s) 794
Eco130I CCWWGG 2 cut(s) 412, 595
Eco47I GGWCC 1 cut(s) 887
Eco88I CYCGRG 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 684, 921
EcoT14I CCWWGG 2 cut(s) 412, 595
ErhI CCWWGG 2 cut(s) 412, 595
FaqI GGGAC 5 cut(s) 224, 233, 428, 701, 722
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 876
FbaI TGATCA 2 cut(s) 13, 990
Fnu4HI GCNGC 9 cut(s) 177, 270, 297, 507, 543, 546, 769, 1007, 1071
Fsp4HI GCNGC 9 cut(s) 177, 270, 297, 507, 543, 546, 769, 1007, 1071
FspBI CTAG 7 cut(s) 122, 158, 332, 413, 578, 639, 680
GluI GCNGC 9 cut(s) 177, 270, 297, 507, 543, 546, 769, 1007, 1071
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 879
HaeIII GGCC 1 cut(s) 796
HgaI GACGC 1 cut(s) 921
Hin1I GRCGYC 1 cut(s) 913
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 3 cut(s) 246, 487, 757
HphI GGTGA 1 cut(s) 401
Hpy188I TCNGA 4 cut(s) 749, 783, 911, 1030
Hpy99I CGWCG 1 cut(s) 915
HpyAV CCTTC 3 cut(s) 226, 266, 996
HpyCH4V TGCA 9 cut(s) 100, 104, 179, 296, 506, 523, 545, 768, 1070
HpyF10VI GCNNNNNNNGC 7 cut(s) 176, 278, 515, 524, 533, 542, 793
HpyF3I CTNAG 1 cut(s) 1027
Hsp92I GRCGYC 1 cut(s) 913
Ksp22I TGATCA 2 cut(s) 13, 990
Kzo9I GATC 4 cut(s) 13, 587, 817, 990
Lsp1109I GCAGC 8 cut(s) 163, 256, 308, 518, 529, 557, 780, 993
LweI GCATC 2 cut(s) 157, 840
MaeI CTAG 7 cut(s) 122, 158, 332, 413, 578, 639, 680
MaeIII GTNAC 2 cut(s) 371, 940
MalI GATC 4 cut(s) 15, 589, 819, 992
MboI GATC 4 cut(s) 13, 587, 817, 990
MboII GAAGA 8 cut(s) 38, 101, 104, 119, 194, 211, 827, 1028
MflI RGATCY 2 cut(s) 587, 817
MhlI GDGCHC 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 796
MluCI AATT 7 cut(s) 140, 429, 491, 600, 654, 659, 870
MluNI TGGCCA 1 cut(s) 796
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 4 cut(s) 66, 502, 670, 934
Mox20I TGGCCA 1 cut(s) 796
MscI TGGCCA 1 cut(s) 796
MseI TTAA 1 cut(s) 1019
MslI CAYNNNNRTG 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 796
MspR9I CCNGG 2 cut(s) 686, 923
Mva1269I GAATGC 2 cut(s) 149, 967
MvaI CCWGG 2 cut(s) 686, 923
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 7 cut(s) 176, 278, 515, 524, 533, 542, 793
NcoI CCATGG 1 cut(s) 595
NdeI CATATG 1 cut(s) 876
NdeII GATC 4 cut(s) 13, 587, 817, 990
NlaIV GGNNCC 2 cut(s) 214, 607
NmuCI GTSAC 1 cut(s) 371
NspI RCATGY 7 cut(s) 64, 104, 281, 313, 518, 559, 791
PaeI GCATGC 3 cut(s) 104, 313, 559
PagI TCATGA 1 cut(s) 16
PctI GAATGC 2 cut(s) 149, 967
PfeI GAWTC 2 cut(s) 487, 757
PflMI CCANNNNNTGG 1 cut(s) 922
PkrI GCNGC 9 cut(s) 178, 271, 298, 508, 544, 547, 770, 1008, 1072
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 684, 921
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 2 cut(s) 684, 921
PspN4I GGNNCC 2 cut(s) 214, 607
PspPI GGNCC 1 cut(s) 887
PstI CTGCAG 4 cut(s) 181, 508, 547, 1072
PsuI RGATCY 2 cut(s) 587, 817
RsaI GTAC 2 cut(s) 363, 932
RsaNI GTAC 2 cut(s) 362, 931
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 1019
SatI GCNGC 9 cut(s) 177, 270, 297, 507, 543, 546, 769, 1007, 1071
Sau3AI GATC 4 cut(s) 13, 587, 817, 990
Sau96I GGNCC 1 cut(s) 887
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 686, 923
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 2 cut(s) 157, 840
SfcI CTRYAG 4 cut(s) 177, 504, 543, 1068
SinI GGWCC 1 cut(s) 887
SmiMI CAYNNNNRTG 1 cut(s) 21
SphI GCATGC 3 cut(s) 104, 313, 559
Sse9I AATT 7 cut(s) 140, 429, 491, 600, 654, 659, 870
SsiI CCGC 1 cut(s) 242
SspI AATATT 1 cut(s) 902
SspMI CTAG 7 cut(s) 122, 158, 332, 413, 578, 639, 680
StyD4I CCNGG 2 cut(s) 684, 921
StyI CCWWGG 2 cut(s) 412, 595
TaqI TCGA 2 cut(s) 485, 696
TasI AATT 7 cut(s) 140, 429, 491, 600, 654, 659, 870
TfiI GAWTC 2 cut(s) 487, 757
Tru1I TTAA 1 cut(s) 1019
Tru9I TTAA 1 cut(s) 1019
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 9 cut(s) 176, 269, 296, 506, 542, 545, 768, 1006, 1070
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 6 cut(s) 39, 367, 408, 681, 828, 863
TspRI CASTG 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 887
XapI RAATTY 3 cut(s) 140, 429, 870
XceI RCATGY 7 cut(s) 64, 104, 281, 313, 518, 559, 791
XmaJI CCTAGG 1 cut(s) 412
XspI CTAG 7 cut(s) 122, 158, 332, 413, 578, 639, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.