Prupe.7G173000_v2.0.a1

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
17367098 .. 17368730
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G173000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 474 bp
ATGTCGTCGCCGTCGAAGAGGATCACCCTGAAGAGCTCTGATCCCGCACTTTTCGAGGTTGACGAGGCGGTGGCTCTCGAGTCGCAGATCATCAAGTATATGATCGAGGACGATTGCGCCGACAAATGCATTCCTGTACCCAACGTGAAGGGCAATATCTTGGCCAAGGTCATCGTGTACTGCAAGAAGCACGCCGACGCTGCTAAGCCTGATTCGAAGATCACCGAGTACGATCTCAAGGCTTGGGATCAGGACTTTCTCGACGATGTTAACCCGGCAACCATATTTGATCTCATTCTTGCTGCAAACTTCTTGAACATCAAGAGCCTGCTGGACCTGACATGCCAGTGTATTGCAGACATGATCAAGGGGAAGACTCCGGCAGAGATCCGAAAGACCTTCAATATAAAGGACAATTTCACCCCGGAGGAGGAGGAGGAAGTTCGTCGTCAGAACCAGTGGGCATTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

158

Amino Acids

17.79

Weight (kDa)

4.76

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 68
AclWI GGATC 4 cut(s) 29, 35, 255, 382
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 138, 179, 230
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 316, 403, 470
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
AlwI GGATC 4 cut(s) 29, 35, 255, 382
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 200, 302
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 2 cut(s) 275, 425
AsuHPI GGTGA 3 cut(s) 16, 214, 412
AsuII TTCGAA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 334
BalI TGGCCA 1 cut(s) 164
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 187, 289
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 2 cut(s) 275, 425
BisI GCNGC 2 cut(s) 201, 303
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 2 cut(s) 202, 304
Bme1390I CCNGG 2 cut(s) 275, 425
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 275, 425
BpiI GAAGAC 1 cut(s) 380
Bpu1102I GCTNAGC 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 275, 425
BsaJI CCNNGG 2 cut(s) 165, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 346, 457
BseDI CCNNGG 2 cut(s) 165, 423
BseLI CCNNNNNNNGG 1 cut(s) 430
BseNI ACTGG 2 cut(s) 346, 457
BseRI GAGGAG 3 cut(s) 443, 446, 449
BseXI GCAGC 2 cut(s) 187, 289
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 3 cut(s) 275, 380, 425
BslI CCNNNNNNNGG 1 cut(s) 430
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 38
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 2 cut(s) 45, 68
BspANI GGCC 1 cut(s) 164
BspPI GGATC 4 cut(s) 29, 35, 255, 382
BspQI GCTCTTC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 215
BsrI ACTGG 2 cut(s) 346, 457
BssECI CCNNGG 2 cut(s) 165, 423
BssT1I CCWWGG 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 11, 26
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 192, 329
BstDEI CTNAG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 273, 423
BstV1I GCAGC 2 cut(s) 187, 289
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuRI GGCC 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 353, 464
Cac8I GCNNGC 2 cut(s) 192, 329
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 137, 178, 229
CviAII CATG 2 cut(s) 342, 361
CviJI RGCY 6 cut(s) 36, 74, 164, 208, 242, 327
CviKI_1 RGCY 6 cut(s) 36, 74, 164, 208, 242, 327
CviQI GTAC 3 cut(s) 137, 178, 229
DdeI CTNAG 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 11, 26
EarI CTCTTC 2 cut(s) 11, 26
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 345, 364
FaiI YATR 6 cut(s) 99, 101, 284, 343, 362, 407
FatI CATG 2 cut(s) 341, 360
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 201, 303
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 201, 303
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 201, 303
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 275, 380, 425
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 119
Hin1II CATG 2 cut(s) 345, 364
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 61, 271
HindII GTYRAC 2 cut(s) 61, 271
HinfI GANTC 3 cut(s) 80, 212, 376
HpaI GTTAAC 1 cut(s) 271
HpaII CCGG 3 cut(s) 275, 380, 425
HphI GGTGA 3 cut(s) 16, 214, 412
Hpy166II GTNNAC 3 cut(s) 61, 178, 271
Hpy188I TCNGA 3 cut(s) 40, 392, 453
Hpy188III TCNNGA 5 cut(s) 77, 251, 260, 313, 322
Hpy8I GTNNAC 3 cut(s) 61, 178, 271
Hpy99I CGWCG 5 cut(s) 10, 16, 200, 266, 450
HpyAV CCTTC 2 cut(s) 142, 409
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 4 cut(s) 129, 183, 305, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 345, 364
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 363
KspAI GTTAAC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 26
Lsp1109I GCAGC 2 cut(s) 187, 289
MaeII ACGT 1 cut(s) 144
MboII GAAGA 4 cut(s) 28, 43, 229, 385
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 1 cut(s) 415
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 2 cut(s) 89, 370
MnlI CCTC 8 cut(s) 12, 49, 58, 100, 421, 424, 427, 430
Mox20I TGGCCA 1 cut(s) 164
Mph1103I ATGCAT 1 cut(s) 131
MscI TGGCCA 1 cut(s) 164
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 346, 469
Msp20I TGGCCA 1 cut(s) 164
MspI CCGG 3 cut(s) 275, 380, 425
MspR9I CCNGG 2 cut(s) 275, 425
Mva1269I GAATGC 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 2 cut(s) 275, 425
NlaIII CATG 2 cut(s) 345, 364
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 1 cut(s) 345
NspV TTCGAA 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 60, 117
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 202, 304
PleI GAGTC 2 cut(s) 88, 370
PpsI GAGTC 2 cut(s) 88, 370
Psp124BI GAGCTC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 387
RsaI GTAC 3 cut(s) 138, 179, 230
RsaNI GTAC 3 cut(s) 137, 178, 229
RseI CAYNNNNRTG 2 cut(s) 346, 469
SacI GAGCTC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 2 cut(s) 201, 303
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 2 cut(s) 89, 370
ScrFI CCNGG 2 cut(s) 275, 425
SduI GDGCHC 1 cut(s) 38
SetI ASST 6 cut(s) 38, 60, 147, 171, 339, 401
Sfr274I CTCGAG 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 346, 469
SmlI CTYRAG 2 cut(s) 77, 236
SmoI CTYRAG 2 cut(s) 77, 236
Sse9I AATT 1 cut(s) 415
SsiI CCGC 2 cut(s) 45, 68
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 273, 423
StyI CCWWGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 147
TaqI TCGA 6 cut(s) 14, 54, 78, 105, 215, 261
TasI AATT 1 cut(s) 415
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 353, 464
TseI GCWGC 2 cut(s) 200, 302
TspRI CASTG 2 cut(s) 353, 464
VpaK11BI GGWCC 1 cut(s) 334
XceI RCATGY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.