Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17834253 .. 17834734

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G183900.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCAACCCTGAAGGAGATTCTTACCCGACGACCCGTGCTGACGACGATCCGGGTCACAGCCCCGGCGGGAGCGGCCACACCCCAACCGCTGAGCAAGGGTTTGGGTCAATACAGGATGAACATGATGGCCTTCTGCAAGGACTTCAACGCCCAGACCCAAAAGTTCAAACCCGGCATACCCATGGCGGTGACACTGACGGTCTTCAAGGACAACACCTACGAGTTCACGGTAAAGTCACCGTCTGTCAGCTGGTACCTGAAAAATGCCACCGGCGTCGACTCCGGCAGCAGCCGACCCAAACACGTGGTCGCTTCTGAGCTGTCTGTGAGGCACTTGTATGAGATCGCCAAAGTGAAGCAATCTGACCCGTATTGCCAGTACATGCCCTTGGAGTCCATTTGTAAGTCCATTATTGGTACGGCTAATTCTATGGGGATTAAGATTGTTAAGGACTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

155

Amino Acids

17.02

Weight (kDa)

9.59

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	4 cut(s)	68, 74, 89, 188
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	32
AcvI	CACGTG	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	3 cut(s)	257, 383, 421
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	148, 169, 208
AluBI	AGCT	2 cut(s)	252, 322
AluI	AGCT	2 cut(s)	252, 322
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	75, 129
ApeKI	GCWGC	2 cut(s)	288, 291
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
Asp718I	GGTACC	1 cut(s)	255
AsuC2I	CCSGG	3 cut(s)	53, 65, 174
AsuHPI	GGTGA	2 cut(s)	202, 231
BanI	GGYRCC	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	300, 303
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	438
BcnI	CCSGG	3 cut(s)	53, 65, 174
BisI	GCNGC	3 cut(s)	75, 289, 292
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	3 cut(s)	76, 290, 293
Bme1390I	CCNGG	3 cut(s)	53, 65, 174
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	3 cut(s)	53, 65, 174
BpiI	GAAGAC	1 cut(s)	196
Bpu1102I	GCTNAGC	1 cut(s)	92
BpuMI	CCSGG	3 cut(s)	53, 65, 174
BsaAI	YACGTR	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	63, 183, 390
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	379
BseDI	CCNNGG	3 cut(s)	63, 183, 390
BseGI	GGATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	83, 309
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	300, 303
BshFI	GGCC	2 cut(s)	77, 131
BshNI	GGYRCC	1 cut(s)	255
BsiSI	CCGG	5 cut(s)	52, 65, 174, 273, 285
BsnI	GGCC	2 cut(s)	77, 131
Bsp143I	GATC	2 cut(s)	48, 345
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	4 cut(s)	68, 74, 89, 188
BspANI	GGCC	2 cut(s)	77, 131
BspCNI	CTCAG	2 cut(s)	84, 310
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	63, 183, 390
BssMI	GATC	2 cut(s)	48, 345
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	183, 390
Bst4CI	ACNGT	3 cut(s)	202, 232, 243
BstACI	GRCGYC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	92, 318
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	51, 348
BstMBI	GATC	2 cut(s)	48, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	3 cut(s)	51, 63, 172
BstV1I	GCAGC	2 cut(s)	300, 303
BstV2I	GAAGAC	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	77, 131
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	272
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	3 cut(s)	256, 382, 420
CviAII	CATG	3 cut(s)	124, 184, 385
CviJI	RGCY	7 cut(s)	62, 77, 131, 252, 294, 322, 425
CviKI_1	RGCY	7 cut(s)	62, 77, 131, 252, 294, 322, 425
CviQI	GTAC	3 cut(s)	256, 382, 420
DdeI	CTNAG	2 cut(s)	92, 318
DpnI	GATC	2 cut(s)	50, 347
DpnII	GATC	2 cut(s)	48, 345
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	183, 390
Eco57I	CTGAAG	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	183, 390
ErhI	CCWWGG	2 cut(s)	183, 390
FaeI	CATG	3 cut(s)	127, 187, 388
FaiI	YATR	6 cut(s)	125, 179, 185, 342, 386, 434
FatI	CATG	3 cut(s)	123, 183, 384
FauI	CCCGC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	75, 289, 292
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	75, 289, 292
GluI	GCNGC	3 cut(s)	75, 289, 292
HaeIII	GGCC	2 cut(s)	77, 131
HapII	CCGG	5 cut(s)	52, 65, 174, 273, 285
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	127, 187, 388
HincII	GTYRAC	2 cut(s)	6, 280
HindII	GTYRAC	2 cut(s)	6, 280
HinfI	GANTC	3 cut(s)	19, 281, 395
HpaII	CCGG	5 cut(s)	52, 65, 174, 273, 285
HphI	GGTGA	2 cut(s)	202, 231
Hpy166II	GTNNAC	3 cut(s)	6, 228, 280
Hpy188I	TCNGA	2 cut(s)	319, 367
Hpy8I	GTNNAC	3 cut(s)	6, 228, 280
Hpy99I	CGWCG	3 cut(s)	33, 49, 281
HpyAV	CCTTC	2 cut(s)	7, 142
HpyCH4III	ACNGT	3 cut(s)	202, 232, 243
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	92, 318
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	127, 187, 388
KpnI	GGTACC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	48, 345
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	2 cut(s)	300, 303
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	55, 190, 237
MalI	GATC	2 cut(s)	50, 347
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	2 cut(s)	48, 345
MboII	GAAGA	1 cut(s)	196
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	2 cut(s)	275, 404
MnlI	CCTC	1 cut(s)	324
MseI	TTAA	2 cut(s)	441, 450
MslI	CAYNNNNRTG	3 cut(s)	182, 188, 339
MspA1I	CMGCKG	2 cut(s)	91, 252
MspI	CCGG	5 cut(s)	52, 65, 174, 273, 285
MspR9I	CCNGG	3 cut(s)	53, 65, 174
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	3 cut(s)	53, 65, 174
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	48, 345
NlaIII	CATG	3 cut(s)	127, 187, 388
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	3 cut(s)	55, 190, 237
NspI	RCATGY	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	76, 290, 293
PleI	GAGTC	2 cut(s)	275, 403
PmaCI	CACGTG	1 cut(s)	307
PmlI	CACGTG	1 cut(s)	307
PpsI	GAGTC	2 cut(s)	275, 403
Ppu21I	YACGTR	1 cut(s)	307
PspCI	CACGTG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	3 cut(s)	257, 383, 421
RsaNI	GTAC	3 cut(s)	256, 382, 420
RseI	CAYNNNNRTG	3 cut(s)	182, 188, 339
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	441, 450
SatI	GCNGC	3 cut(s)	75, 289, 292
Sau3AI	GATC	2 cut(s)	48, 345
SchI	GAGTC	2 cut(s)	275, 404
ScrFI	CCNGG	3 cut(s)	53, 65, 174
SetI	ASST	5 cut(s)	221, 254, 261, 309, 324
SgrAI	CRCCGGYG	1 cut(s)	272
SmiMI	CAYNNNNRTG	3 cut(s)	182, 188, 339
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	4 cut(s)	68, 74, 89, 188
StyD4I	CCNGG	3 cut(s)	51, 63, 172
StyI	CCWWGG	2 cut(s)	183, 390
TaaI	ACNGT	3 cut(s)	202, 232, 243
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	279
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	441, 450
Tru9I	TTAA	2 cut(s)	441, 450
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	3 cut(s)	55, 190, 237
TseI	GCWGC	2 cut(s)	288, 291
Tsp45I	GTSAC	3 cut(s)	55, 190, 237
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	201
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.