Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17936644 .. 17937557

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G184900.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTTCTTGAAACTGATGCAGGCTGTGTTGTGAAGGATCCACGAAAGGCGCATCTGTTTTATATGCCATTTAGTTCACGGATGCTAGAGTACACTCTATATGTACGTAACTCTCACAACCGTACAAACCTACGCCAATTTTTGAAGGAATATTCTGAAAAAATTGCAGCAAAGTATCCTTACTGGAACAGAATTGGTGGAGCAGATCATTTTCTTGTTGCTTGCCATGACTGGGCTCCATATGAAACAAGGCACCATATGGAACGTTGCATCAAAGCCCTCTGCAATGATGATGTAACTGGCGGCTTTAAAATAGGAAGGGATGTGTCTCTTTGGGAAACATACGTTCATTCTGCGAGAAATCCTCTTAGAGATCTTGGAGGCAAACCCCCTTCTCAGAGGCAGATTCTTGCCTTTTATGCTGGAAATGTGCATGTCTATTTACATCCAATTCTGATAGAGCACTGGAAGGACAAAGACCCTGATATGAAGATCTTTGGTCCAATGCCTCGTGGTGTTGCAATCAAAATGAACTACATCCAGCATATGAAGAGAAGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

188

Amino Acids

21.92

Weight (kDa)

9.41

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	252
AciI	CCGC	1 cut(s)	303
AclI	AACGTT	1 cut(s)	265
AclWI	GGATC	2 cut(s)	32, 45
AfaI	GTAC	3 cut(s)	92, 105, 124
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	11, 145
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	32, 45
ApeKI	GCWGC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	186
BglII	AGATCT	2 cut(s)	373, 492
BisI	GCNGC	2 cut(s)	168, 304
BlsI	GCNGC	2 cut(s)	169, 305
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	39, 237, 254
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	4 cut(s)	7, 61, 72, 279
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BsaAI	YACGTR	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	4 cut(s)	188, 236, 304, 470
Bse3DI	GCAATG	1 cut(s)	292
BseGI	GGATG	4 cut(s)	87, 328, 445, 537
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	4 cut(s)	188, 236, 304, 470
BseXI	GCAGC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	238, 465
Bsp143I	GATC	4 cut(s)	37, 205, 373, 492
BspACI	CCGC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	39, 237, 254
BspPI	GGATC	2 cut(s)	32, 45
BspT107I	GGYRCC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	4 cut(s)	188, 236, 304, 470
BssMI	GATC	4 cut(s)	37, 205, 373, 492
BssSI	CACGAG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	22, 223
BstDEI	CTNAG	2 cut(s)	368, 396
BstF5I	GGATG	4 cut(s)	87, 328, 445, 537
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	4 cut(s)	40, 208, 376, 495
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	4 cut(s)	37, 205, 373, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	437
BstSNI	TACGTA	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	179
BstX2I	RGATCY	3 cut(s)	37, 373, 492
BstYI	RGATCY	3 cut(s)	37, 373, 492
BsuI	GTATCC	1 cut(s)	186
BtsCI	GGATG	4 cut(s)	87, 328, 445, 537
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	22, 223
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	91, 104, 123
CviAII	CATG	2 cut(s)	227, 434
CviJI	RGCY	4 cut(s)	24, 236, 278, 306
CviKI_1	RGCY	4 cut(s)	24, 236, 278, 306
CviQI	GTAC	3 cut(s)	91, 104, 123
DdeI	CTNAG	2 cut(s)	368, 396
DpnI	GATC	4 cut(s)	39, 207, 375, 494
DpnII	GATC	4 cut(s)	37, 205, 373, 492
DraI	TTTAAA	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco105I	TACGTA	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	2 cut(s)	230, 437
FatI	CATG	2 cut(s)	226, 433
FauNDI	CATATG	3 cut(s)	241, 258, 546
Fnu4HI	GCNGC	2 cut(s)	168, 304
FokI	GGATG	4 cut(s)	94, 335, 432, 524
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	168, 304
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	2 cut(s)	168, 304
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	230, 437
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	77, 93
Hpy188I	TCNGA	3 cut(s)	157, 399, 456
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	77, 93
HpyAV	CCTTC	5 cut(s)	28, 139, 312, 402, 463
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	3 cut(s)	106, 265, 345
HpyCH4V	TGCA	6 cut(s)	20, 167, 270, 285, 433, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	368, 396
HpySE526I	ACGT	3 cut(s)	106, 265, 345
Hsp92II	CATG	2 cut(s)	230, 437
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	37, 205, 373, 492
LmnI	GCTCC	2 cut(s)	200, 241
LpnPI	CCDG	8 cut(s)	6, 169, 217, 285, 408, 451, 495, 554
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	4 cut(s)	7, 61, 72, 279
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	3 cut(s)	106, 265, 345
MaeIII	GTNAC	2 cut(s)	107, 295
MalI	GATC	4 cut(s)	39, 207, 375, 494
MboI	GATC	4 cut(s)	37, 205, 373, 492
MboII	GAAGA	2 cut(s)	502, 562
MflI	RGATCY	3 cut(s)	37, 373, 492
MhlI	GDGCHC	2 cut(s)	238, 465
MluCI	AATT	4 cut(s)	137, 162, 192, 450
MnlI	CCTC	5 cut(s)	290, 374, 375, 393, 519
MseI	TTAA	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeI	CATATG	3 cut(s)	241, 258, 546
NdeII	GATC	4 cut(s)	37, 205, 373, 492
NlaIII	CATG	2 cut(s)	230, 437
NlaIV	GGNNCC	3 cut(s)	39, 237, 254
NspI	RCATGY	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	169, 305
Ppu21I	YACGTR	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	265
PspN4I	GGNNCC	3 cut(s)	39, 237, 254
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	3 cut(s)	37, 373, 492
RsaI	GTAC	3 cut(s)	92, 105, 124
RsaNI	GTAC	3 cut(s)	91, 104, 123
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	168, 304
Sau3AI	GATC	4 cut(s)	37, 205, 373, 492
Sau96I	GGNCC	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	238, 465
SetI	ASST	4 cut(s)	109, 132, 268, 348
SfaNI	GCATC	4 cut(s)	7, 61, 72, 279
SinI	GGWCC	1 cut(s)	500
SnaBI	TACGTA	1 cut(s)	107
Sse9I	AATT	4 cut(s)	137, 162, 192, 450
SsiI	CCGC	1 cut(s)	303
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	3 cut(s)	109, 268, 348
TasI	AATT	4 cut(s)	137, 162, 192, 450
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	5 cut(s)	258, 338, 503, 545, 563
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	500
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.