Prupe.7G186100_v2.0.a1
MYB Family

ubiquitin modification-dependent histone binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
18002254 .. 18002793
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G186100.1

Sequence Viewer

Length: 540 bp
TTATTTCTAGTGGGAGTGATAAAACATGGCCTGGGGAGCTGGTCCACAATTGCTAAGGAGTTTGTGTCAACTAAGACCCCACATCAAGTTGCCATATATGCTGAGTCTTTCTTTATGCGTCTCCTGAAACCATTTCTATATAACTTGGGCTTCAAGAGGACAAAGCAATTACCAACAATCATTCCTCCTCGTGAAATGGATATGAACTTACCACTACCTGATAATTATTCATCAAGCTCAAAGCCCCCTGTTCCTGCAGCCATGGCAACTCCAGCAGCATCTGGTTCAAACTCTATGTCTCTTCAAAAGCTGGACAAGTACACCTCCCTTTTTTTCCCCCTGGAGGCTTCTTCAGATGAAAGGAGTGCTAAAACTACTCCACCTGTGGAGCCCGAGATGCCGGTGAGCCTCCGTGCTTTGGCTGAGGAACCTGAGCCTATTAAAATCAGTCTTGCGCTGCCTGAGTTTGAGAGAGACAATGAAATGGAAGAGGAAGAGCTCAACCTAGAGCTCACCTTAGGTCGTGGGGGCACCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

180

Amino Acids

19.81

Weight (kDa)

5.17

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 343, 418
AgsI TTSAA 3 cut(s) 154, 288, 305
AjnI CCWGG 2 cut(s) 30, 339
AluBI AGCT 6 cut(s) 39, 237, 310, 499, 511, 537
AluI AGCT 6 cut(s) 39, 237, 310, 499, 511, 537
Alw21I GWGCWC 2 cut(s) 501, 513
Alw26I GTCTC 3 cut(s) 125, 303, 468
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 257, 275, 457
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 415, 505
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 42
AxyI CCTNAGG 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 533
BanI GGYRCC 1 cut(s) 530
BanII GRGCYC 3 cut(s) 393, 501, 513
BauI CACGAG 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 501, 513
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 269, 287, 444
BciT130I CCWGG 2 cut(s) 32, 341
BcoDI GTCTC 3 cut(s) 125, 303, 468
BfaI CTAG 3 cut(s) 8, 506, 538
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 3 cut(s) 258, 276, 458
BlsI GCNGC 3 cut(s) 259, 277, 459
Bme1390I CCNGG 2 cut(s) 32, 341
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 3 cut(s) 390, 429, 532
BmrFI CCNGG 2 cut(s) 32, 341
BmsI GCATC 2 cut(s) 287, 387
BpmI CTGGAG 2 cut(s) 255, 362
Bpu10I CCTNAGC 3 cut(s) 54, 423, 432
BsaJI CCNNGG 3 cut(s) 31, 261, 339
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 418
Bse118I RCCGGY 1 cut(s) 400
Bse21I CCTNAGG 1 cut(s) 517
BseBI CCWGG 2 cut(s) 32, 341
BseDI CCNNGG 3 cut(s) 31, 261, 339
BseLI CCNNNNNNNGG 2 cut(s) 343, 418
BseMII CTCAG 4 cut(s) 93, 414, 423, 453
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 3 cut(s) 269, 287, 444
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 530
BsiHKAI GWGCWC 2 cut(s) 501, 513
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 343, 418
BsmAI GTCTC 3 cut(s) 125, 303, 468
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 4 cut(s) 393, 501, 513, 533
Bsp19I CCATGG 1 cut(s) 261
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 4 cut(s) 94, 415, 424, 454
BspLI GGNNCC 3 cut(s) 390, 429, 532
BspMAI CTGCAG 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 489
BspT107I GGYRCC 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 31, 261, 339
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 32, 341
Bst6I CTCTTC 3 cut(s) 306, 483, 489
BstDEI CTNAG 7 cut(s) 54, 72, 102, 423, 432, 462, 517
BstDSI CCRYGG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 457
BstMAI GTCTC 3 cut(s) 125, 303, 468
BstMWI GCNNNNNNNGC 5 cut(s) 36, 98, 263, 272, 397
BstNI CCWGG 2 cut(s) 32, 341
BstSCI CCNGG 2 cut(s) 30, 339
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 3 cut(s) 269, 287, 444
Bsu36I CCTNAGG 1 cut(s) 517
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 26, 262
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 7 cut(s) 54, 72, 102, 423, 432, 462, 517
Eam1104I CTCTTC 3 cut(s) 306, 483, 489
EarI CTCTTC 3 cut(s) 306, 483, 489
Ecl136II GAGCTC 2 cut(s) 499, 511
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 3 cut(s) 393, 501, 513
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 2 cut(s) 499, 511
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 2 cut(s) 499, 511
EcoRII CCWGG 2 cut(s) 30, 339
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 3 cut(s) 393, 501, 513
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 2 cut(s) 29, 265
FatI CATG 2 cut(s) 25, 261
Fnu4HI GCNGC 3 cut(s) 258, 276, 458
FriOI GRGCYC 3 cut(s) 393, 501, 513
Fsp4HI GCNGC 3 cut(s) 258, 276, 458
FspBI CTAG 3 cut(s) 8, 506, 538
GlaI GCGC 1 cut(s) 456
GluI GCNGC 3 cut(s) 258, 276, 458
GsuI CTGGAG 2 cut(s) 255, 362
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 457
Hin1II CATG 2 cut(s) 29, 265
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 415, 505
Hpy166II GTNNAC 3 cut(s) 45, 69, 321
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 3 cut(s) 124, 154, 191
Hpy8I GTNNAC 3 cut(s) 45, 69, 321
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 98, 263, 272, 397
HpyF3I CTNAG 7 cut(s) 54, 72, 102, 423, 432, 462, 517
Hsp92II CATG 2 cut(s) 29, 265
HspAI GCGC 1 cut(s) 455
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 2 cut(s) 36, 388
Lsp1109I GCAGC 3 cut(s) 269, 287, 444
LweI GCATC 2 cut(s) 287, 387
MaeI CTAG 3 cut(s) 8, 506, 538
MboII GAAGA 4 cut(s) 293, 342, 500, 506
MfeI CAATTG 1 cut(s) 48
MhlI GDGCHC 4 cut(s) 393, 501, 513, 533
MluCI AATT 3 cut(s) 48, 167, 223
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 8 cut(s) 150, 195, 198, 334, 337, 418, 419, 484
MseI TTAA 1 cut(s) 441
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 32, 341
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 2 cut(s) 32, 341
MwoI GCNNNNNNNGC 5 cut(s) 36, 98, 263, 272, 397
NcoI CCATGG 1 cut(s) 261
NlaIII CATG 2 cut(s) 29, 265
NlaIV GGNNCC 3 cut(s) 390, 429, 532
PciSI GCTCTTC 1 cut(s) 489
PkrI GCNGC 3 cut(s) 259, 277, 459
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp124BI GAGCTC 2 cut(s) 501, 513
Psp6I CCWGG 2 cut(s) 30, 339
PspGI CCWGG 2 cut(s) 30, 339
PspN4I GGNNCC 3 cut(s) 390, 429, 532
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 2 cut(s) 501, 513
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 258, 276, 458
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 32, 341
SduI GDGCHC 4 cut(s) 393, 501, 513, 533
SfaNI GCATC 2 cut(s) 287, 387
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 42
Sse9I AATT 3 cut(s) 48, 167, 223
SspMI CTAG 3 cut(s) 8, 506, 538
SstI GAGCTC 2 cut(s) 501, 513
StyD4I CCNGG 2 cut(s) 30, 339
StyI CCWWGG 1 cut(s) 261
TasI AATT 3 cut(s) 48, 167, 223
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseI GCWGC 3 cut(s) 257, 275, 457
TspDTI ATGAA 4 cut(s) 218, 219, 372, 495
TspGWI ACGGA 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 42
XspI CTAG 3 cut(s) 8, 506, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.