Prupe.7G186500_v2.0.a1

RNA polymerase I-specific transcription initiation factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
18029220 .. 18030624
1405 bp
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UTR
Exon/CDS
Intron
Prupe.7G186500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 531 bp
ATGGCTTTTCGAAAGCCCATTGGGCTTGTAGCACCTTGTATTGCTAGTGGTGTAGATTATATCCGAAATGAAAAGACCAAATTCAACTTAGTTGCTGGTTTATTCATGACATTTGAGAAAATCTATTTTGACGACTACCTGCTGGAATTAGTACTGTCTTGGCATGGATTATGTTTAGGGACTGATTTGGTTTGGCTTGGTCTAAGTTGGATAACATTTATCCTGCGTTTGGTTTACATCCTGCCAAACTTCATTTTCTGGTCAATGGTTCAATCCACATATGATGACAAAGATTCCAGTGATGAAAATGTCGGTGAAGCTTTTGCGGGTGACGATGACAGTGGAATGGATTATGGGATTATGCAGAGCTTGGAGAAACAACATTTTGATTTTGCTGAAGTTGGCTTTGCATTGAACAAAATGTCAATCACACCGAAGGATTCCTTACATAGTAGGTTTGGTGGTGCAATAAACCAACCCATGCGAATGCCCTCAAGAATTAGACTGTCAACTAGTCCGGAGTCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

19.96

Weight (kDa)

4.85

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 3 cut(s) 85, 272, 415
AhlI ACTAGT 1 cut(s) 512
AluBI AGCT 2 cut(s) 320, 369
AluI AGCT 2 cut(s) 320, 369
Aor13HI TCCGGA 1 cut(s) 517
ApoI RAATTY 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 326, 341
AsuII TTCGAA 1 cut(s) 10
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 45, 513
BfuAI ACCTGC 1 cut(s) 147
BglI GCCNNNNNGGC 1 cut(s) 22
BmcAI AGTACT 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 478
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 1 cut(s) 512
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 517
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 492
Bsp119I TTCGAA 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 517
BspACI CCGC 1 cut(s) 326
BspEI TCCGGA 1 cut(s) 517
BspHI TCATGA 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 10
BsrI ACTGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 156, 341, 507
BstBI TTCGAA 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 88, 203
BstF5I GGATG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 304, 346
BveI ACCTGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 105
Csp6I GTAC 1 cut(s) 152
CviAII CATG 3 cut(s) 106, 164, 481
CviJI RGCY 7 cut(s) 5, 16, 25, 196, 320, 369, 405
CviKI_1 RGCY 7 cut(s) 5, 16, 25, 196, 320, 369, 405
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 2 cut(s) 88, 203
Eco57I CTGAAG 1 cut(s) 417
FaeI CATG 3 cut(s) 109, 167, 484
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 1 cut(s) 193
FatI CATG 3 cut(s) 105, 163, 480
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 1 cut(s) 280
FokI GGATG 1 cut(s) 224
FspBI CTAG 2 cut(s) 45, 513
HapII CCGG 1 cut(s) 518
Hin1II CATG 3 cut(s) 109, 167, 484
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 3 cut(s) 293, 440, 521
HpaII CCGG 1 cut(s) 518
HphI GGTGA 2 cut(s) 326, 341
Hpy166II GTNNAC 2 cut(s) 235, 510
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 3 cut(s) 106, 495, 518
Hpy8I GTNNAC 2 cut(s) 235, 510
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 3 cut(s) 156, 341, 507
HpyCH4V TGCA 3 cut(s) 364, 410, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 88, 203
Hsp92II CATG 3 cut(s) 109, 167, 484
Kpn2I TCCGGA 1 cut(s) 517
LpnPI CCDG 7 cut(s) 81, 128, 152, 236, 244, 254, 310
MaeI CTAG 2 cut(s) 45, 513
MaeIII GTNAC 1 cut(s) 329
MluCI AATT 3 cut(s) 80, 146, 498
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 1 cut(s) 502
MroI TCCGGA 1 cut(s) 517
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeI CATATG 1 cut(s) 280
NlaIII CATG 3 cut(s) 109, 167, 484
NmuCI GTSAC 1 cut(s) 329
NspV TTCGAA 1 cut(s) 10
PagI TCATGA 1 cut(s) 105
PctI GAATGC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 293, 440
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 485
ScaI AGTACT 1 cut(s) 153
SchI GAGTC 1 cut(s) 530
SetI ASST 5 cut(s) 37, 141, 322, 371, 458
SfuI TTCGAA 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 3 cut(s) 80, 146, 498
SsiI CCGC 1 cut(s) 326
SspMI CTAG 2 cut(s) 45, 513
TaaI ACNGT 3 cut(s) 156, 341, 507
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 80, 146, 498
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 2 cut(s) 293, 440
TscAI CASTG 2 cut(s) 304, 346
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 84, 94, 241, 318
TspRI CASTG 2 cut(s) 304, 346
XapI RAATTY 1 cut(s) 80
XspI CTAG 2 cut(s) 45, 513
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.