Prupe.7G187300_v2.0.a1

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
18068910 .. 18069475
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G187300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 345 bp
ATGAATATTTATTGCCTAATAACAAAGATAATTGCAGGTTTTCTTGAATCATTATGGAGGGACATTGACATGAACAGGCTTCGCCATGACCCTTGCCATGACCTCAATATTATAATAATATCACACAGGTTAACGTCCCGCGTCTTCCTAATGAAGTGGTTCAAGTGGACGGTTGAGCAATTCGAGCTCCTAAACAATCTTGGAAATTGCGAATTTCGAGTGATGCAATTAGGAAAGGGCGGAGAATACAGCTTAGCAATCCATCACAGTGAGGAAGAACTAGTAGAATGGGGTCTCCCCCCTGGAATGAGCGTTGCCCCTGCATCTCTTGAATGCTGGAAATAG

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

5.91

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 26
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 139, 240
AcsI RAATTY 1 cut(s) 212
AgsI TTSAA 3 cut(s) 47, 163, 332
AhlI ACTAGT 1 cut(s) 280
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 187, 252
AluI AGCT 2 cut(s) 187, 252
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 189
BccI CCATC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 280
BfaI CTAG 1 cut(s) 281
BfuAI ACCTGC 1 cut(s) 26
BlpI GCTNAGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 213, 332
BpiI GAAGAC 1 cut(s) 136
Bpu1102I GCTNAGC 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 189
BslFI GGGAC 2 cut(s) 74, 121
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 74, 121
BsmI GAATGC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 189
Bsp1720I GCTNAGC 1 cut(s) 253
BspACI CCGC 2 cut(s) 139, 240
BspFNI CGCG 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 172, 269
BstDEI CTNAG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstUI CGCG 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 26
CseI GACGC 1 cut(s) 130
CviAII CATG 3 cut(s) 70, 86, 98
CviJI RGCY 3 cut(s) 79, 187, 252
CviKI_1 RGCY 3 cut(s) 79, 187, 252
DdeI CTNAG 1 cut(s) 253
EciI GGCGGA 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 3 cut(s) 73, 89, 101
FaiI YATR 5 cut(s) 55, 71, 87, 99, 113
FaqI GGGAC 2 cut(s) 74, 121
FatI CATG 3 cut(s) 69, 85, 97
FauI CCCGC 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 189
FspBI CTAG 1 cut(s) 281
HgaI GACGC 1 cut(s) 130
Hin1II CATG 3 cut(s) 73, 89, 101
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 1 cut(s) 47
HpaI GTTAAC 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 132, 168
Hpy188III TCNNGA 2 cut(s) 44, 329
Hpy8I GTNNAC 2 cut(s) 132, 168
HpyCH4III ACNGT 2 cut(s) 172, 269
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 35, 226, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 3 cut(s) 73, 89, 101
KspAI GTTAAC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 7 cut(s) 21, 61, 112, 288, 315, 322, 333
LweI GCATC 2 cut(s) 213, 332
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 134
MboII GAAGA 2 cut(s) 136, 287
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 5 cut(s) 30, 179, 205, 212, 227
MnlI CCTC 3 cut(s) 51, 113, 265
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 2 cut(s) 68, 267
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 184
NlaIII CATG 3 cut(s) 73, 89, 101
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 47
PsiI TTATAA 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
RseI CAYNNNNRTG 2 cut(s) 68, 267
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 40, 105, 131, 137, 189, 254
SfaNI GCATC 2 cut(s) 213, 332
SmiMI CAYNNNNRTG 2 cut(s) 68, 267
SpeI ACTAGT 1 cut(s) 280
Sse9I AATT 5 cut(s) 30, 179, 205, 212, 227
SsiI CCGC 2 cut(s) 139, 240
SspI AATATT 2 cut(s) 7, 109
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 172, 269
TaiI ACGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 183, 217
TasI AATT 5 cut(s) 30, 179, 205, 212, 227
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 17, 86, 167
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.