Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18069953 .. 18070418

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G187400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTGGAGATGGGCCGTCACCTCTTTCACTCAATGGTGAAAGACTATCATATTGAACCATCTCCTCAACATTATTCAAGTATGGTGGACATGTTGGGACGGGCAGGGAAATTGGAGGAAGCAGAGGAATTGATGAGTCAGATCCCGGGACAGCCAGGGTTTTTGTTGTTGCAAAGCCTGCTCGGGGCTTGCAGGATCCATGGGAATGTGGAGATGGAGAAAGGGATGAGAGATAAAGGAGTGAGAAAGGAAGTGGGATATAGTTGGGTGGATACTGGTGATGCTGATGGTTCCTTGTATCTGCATGGGTTTTCATCAGGTGATACATCCCACCCAGAGTCTGGGAAGATATGTAGAATGGCAAAATGTCTAGGATTAGAGATGAAAATTTTGAGAGAGAACATGTGGGAGACAAAATCACTGAAAATGGACTCCTTCTCAAGGCCCTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

152

Amino Acids

16.96

Weight (kDa)

6.15

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AclWI	GGATC	3 cut(s)	136, 190, 203
AcsI	RAATTY	1 cut(s)	387
AfiI	CCNNNNNNNGG	3 cut(s)	184, 341, 441
AflIII	ACRYGT	2 cut(s)	90, 402
AgsI	TTSAA	2 cut(s)	56, 78
AjnI	CCWGG	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	3 cut(s)	136, 190, 203
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	2 cut(s)	145, 182
AoxI	GGCC	2 cut(s)	13, 443
ApoI	RAATTY	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	13, 444
AsuC2I	CCSGG	2 cut(s)	146, 147
AsuHPI	GGTGA	4 cut(s)	11, 49, 290, 332
AvaI	CYCGRG	2 cut(s)	145, 182
BamHI	GGATCC	1 cut(s)	195
BccI	CCATC	4 cut(s)	4, 67, 208, 281
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	146, 147
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	265
Bme1390I	CCNGG	3 cut(s)	146, 147, 156
BmeT110I	CYCGRG	2 cut(s)	145, 182
BmgT120I	GGNCC	2 cut(s)	13, 444
BmiI	GGNNCC	2 cut(s)	197, 292
BmrFI	CCNGG	3 cut(s)	146, 147, 156
BmsI	GCATC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	424
BpuMI	CCSGG	2 cut(s)	146, 147
BsaJI	CCNNGG	3 cut(s)	145, 155, 199
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 341, 441
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	145, 155, 199
BseGI	GGATG	2 cut(s)	231, 326
BseLI	CCNNNNNNNGG	3 cut(s)	184, 341, 441
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	15, 445
BsiHKCI	CYCGRG	2 cut(s)	145, 182
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	111, 162
BslI	CCNNNNNNNGG	3 cut(s)	184, 341, 441
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	2 cut(s)	111, 162
BsnI	GGCC	2 cut(s)	15, 445
BsoBI	CYCGRG	2 cut(s)	145, 182
Bsp143I	GATC	2 cut(s)	141, 195
Bsp19I	CCATGG	1 cut(s)	199
BspANI	GGCC	2 cut(s)	15, 445
BspLI	GGNNCC	2 cut(s)	197, 292
BspPI	GGATC	3 cut(s)	136, 190, 203
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	3 cut(s)	145, 155, 199
BssMI	GATC	2 cut(s)	141, 195
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	179, 190
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	231, 326
BstKTI	GATC	2 cut(s)	144, 198
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	2 cut(s)	141, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	2 cut(s)	94, 406
BstSCI	CCNGG	3 cut(s)	144, 145, 154
BstX2I	RGATCY	2 cut(s)	141, 195
BstYI	RGATCY	2 cut(s)	141, 195
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	15, 445
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	231, 326
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	179, 190
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	13, 444
Cfr9I	CCCGGG	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	4 cut(s)	91, 200, 305, 403
CviJI	RGCY	5 cut(s)	15, 154, 177, 188, 445
CviKI_1	RGCY	5 cut(s)	15, 154, 177, 188, 445
DpnI	GATC	2 cut(s)	143, 197
DpnII	GATC	2 cut(s)	141, 195
Eco130I	CCWWGG	1 cut(s)	199
Eco88I	CYCGRG	2 cut(s)	145, 182
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	4 cut(s)	94, 203, 308, 406
FaiI	YATR	8 cut(s)	51, 83, 92, 201, 261, 306, 352, 404
FaqI	GGGAC	2 cut(s)	111, 162
FatI	CATG	4 cut(s)	90, 199, 304, 402
FokI	GGATG	2 cut(s)	238, 313
FspBI	CTAG	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	15, 445
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	4 cut(s)	94, 203, 308, 406
HinfI	GANTC	3 cut(s)	136, 338, 431
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	4 cut(s)	11, 49, 290, 332
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	445
HpyCH4V	TGCA	3 cut(s)	172, 192, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	94, 203, 308, 406
Kzo9I	GATC	2 cut(s)	141, 195
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	143, 197
MboI	GATC	2 cut(s)	141, 195
MboII	GAAGA	1 cut(s)	358
MflI	RGATCY	2 cut(s)	141, 195
MluCI	AATT	3 cut(s)	110, 128, 387
MlyI	GAGTC	3 cut(s)	145, 347, 425
MnlI	CCTC	4 cut(s)	32, 75, 109, 118
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	3 cut(s)	146, 147, 156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	146, 147
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	141, 195
NlaIII	CATG	4 cut(s)	94, 203, 308, 406
NlaIV	GGNNCC	2 cut(s)	197, 292
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	2 cut(s)	94, 406
PciI	ACATGT	2 cut(s)	90, 402
PflMI	CCANNNNNTGG	1 cut(s)	341
PleI	GAGTC	3 cut(s)	144, 346, 425
PpsI	GAGTC	3 cut(s)	144, 346, 425
PscI	ACATGT	2 cut(s)	90, 402
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	197, 292
PspPI	GGNCC	2 cut(s)	13, 444
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	141, 195
RseI	CAYNNNNRTG	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	141, 195
Sau96I	GGNCC	2 cut(s)	13, 444
SchI	GAGTC	3 cut(s)	145, 347, 425
ScrFI	CCNGG	3 cut(s)	146, 147, 156
SetI	ASST	2 cut(s)	24, 322
SfaNI	GCATC	1 cut(s)	271
SmaI	CCCGGG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	3 cut(s)	110, 128, 387
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	3 cut(s)	144, 145, 154
StyI	CCWWGG	1 cut(s)	199
TasI	AATT	3 cut(s)	110, 128, 387
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	303, 398
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	1 cut(s)	426
Van91I	CCANNNNNTGG	1 cut(s)	341
XagI	CCTNNNNNAGG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	2 cut(s)	94, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmaI	CCCGGG	1 cut(s)	145
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.