Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18293773 .. 18296611

Gene Structure 2839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G191300.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAGGGAAGAAACTTCGACACCAAAGGAAGGTTGTAGGATTGGCGATATTGTTAATCAATGACCAACAAGATGATATTAATCCAAGCACTTTCACATGTGATTTCTGCGTTGAGTCAAAGCATCTGCAAGAGTCATTCAAGGTGAAGGGTTGCAGCCATTTTTATTGCGACCAATGCATTGTCAAATTCGTAGTGTCCAAGCTCCAAGACAATGTGACATCCATTATGTGCCCTGTGCCAGGCTGCAAGGGCATGTTAGACCCGGAGCACTGCCGTCCAATTCTCCCGAACCAAATTTTCGATCGGTGGGGCAGTGCCTTGTGTGAAGCTGTGGTTATGGGGTCTGAGACTGACAAGTACTTGTACTGTCCCTTCAAGGATTGCTCAGCGTTGTTGGTTTATGAGAATGGCACCAAACGGGCTGTGTGTGCATCAGTGTGTCCTCATTGCAAGAGAGAGTTGTGCCCTAGTTGTAAGGTTCCTTGGCATACTGAATTCGATTGTGCCCAGTTTCAGAAACTAAATGATGATGATATGGTCAAGGTGCTTGCCAGAAAACTGAAGTGGCCGAGGTGTCCAAGTTGCAAATACTATATTCAAAAATCTTCTGGGTGCAACCGCATGATATGCAGGTGTGGACGTGGGTTCTTATACAACGAACCCAGCTATTCCTTTTACGACAGAATACGTATATTCTTGGAAGAAACACCTATATTTTTGAACGAAATACATATATCATTCTTGAAAGAAACACGTATATTTTGGAACAAAATACGTATATCATTCTTGAAAGAAATACAAGAAGCACGTATATCATTCTTGAAAGAAACACGTATATTCTTGAAAGAAGCACAAGAAGCACGTATATCATTCTTGAAAGACACACGTATATTCTTGAAAGAAACACAAGAAGCACGTATATCATTCTTGAAAGAAACACGTATATTCTTGAAAGAAACAAGTATATCATTGAAAGAAATACTTATATTCTTGAAAGAAAGACGTATATTATTCTTGAAAGAAATACATATATTCTTGAAAGAAATATGTATATTCTTGAAAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

358

Amino Acids

41.9

Weight (kDa)

8.83

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	413
AciI	CCGC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	569
AcsI	RAATTY	3 cut(s)	188, 297, 497
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	362, 368
AfiI	CCNNNNNNNGG	2 cut(s)	31, 242
AflIII	ACRYGT	5 cut(s)	98, 755, 833, 887, 941
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	3 cut(s)	205, 332, 669
AluI	AGCT	3 cut(s)	205, 332, 669
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	156, 246
ApoI	RAATTY	3 cut(s)	188, 297, 497
AseI	ATTAAT	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	157
BaeGI	GKGCMC	3 cut(s)	236, 470, 511
BanI	GGYRCC	1 cut(s)	413
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	168, 233
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	624
BisI	GCNGC	2 cut(s)	157, 247
BlpI	GCTNAGC	1 cut(s)	388
BlsI	GCNGC	2 cut(s)	158, 248
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	243, 266
BmgBI	CACGTC	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	415, 483
BmrFI	CCNGG	2 cut(s)	243, 266
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	133, 443
BmuI	ACTGGG	1 cut(s)	505
Bpu1102I	GCTNAGC	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	266
BsaAI	YACGTR	9 cut(s)	692, 758, 779, 812, 836, 866, 890, 920, 944
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	485, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 242
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	485, 572
BseGI	GGATG	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	31, 242
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	339, 402
BseNI	ACTGG	1 cut(s)	511
BseSI	GKGCMC	3 cut(s)	236, 470, 511
BseXI	GCAGC	2 cut(s)	168, 233
BseYI	CCCAGC	1 cut(s)	665
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	571
BshNI	GGYRCC	1 cut(s)	413
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	31, 242
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	571
Bsp1286I	GDGCHC	4 cut(s)	236, 273, 470, 511
Bsp143I	GATC	1 cut(s)	304
Bsp1720I	GCTNAGC	1 cut(s)	388
BspACI	CCGC	1 cut(s)	622
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	2 cut(s)	340, 401
BspLI	GGNNCC	2 cut(s)	415, 483
BspMI	ACCTGC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	485, 572
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	630
BstBAI	YACGTR	9 cut(s)	692, 758, 779, 812, 836, 866, 890, 920, 944
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	348, 388
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 252, 431, 630, 860
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	2 cut(s)	102, 259
BstSCI	CCNGG	2 cut(s)	241, 264
BstSLI	GKGCMC	3 cut(s)	236, 470, 511
BstSNI	TACGTA	2 cut(s)	692, 779
BstV1I	GCAGC	2 cut(s)	168, 233
BsuRI	GGCC	1 cut(s)	571
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	2 cut(s)	271, 322
BtsIMutI	CAGTG	3 cut(s)	271, 322, 444
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	1 cut(s)	552
Csp6I	GTAC	2 cut(s)	361, 367
CviAII	CATG	3 cut(s)	99, 256, 625
CviJI	RGCY	7 cut(s)	159, 205, 246, 332, 425, 571, 669
CviKI_1	RGCY	7 cut(s)	159, 205, 246, 332, 425, 571, 669
CviQI	GTAC	2 cut(s)	361, 367
DdeI	CTNAG	2 cut(s)	348, 388
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	569
Eco105I	TACGTA	2 cut(s)	692, 779
Eco130I	CCWWGG	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	584
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	3 cut(s)	102, 259, 628
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	98, 255, 624
Fnu4HI	GCNGC	2 cut(s)	157, 247
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	157, 247
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	2 cut(s)	157, 247
GsaI	CCCAGC	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	3 cut(s)	102, 259, 628
HinfI	GANTC	2 cut(s)	116, 134
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	2 cut(s)	349, 519
Hpy8I	GTNNAC	1 cut(s)	641
HpyAV	CCTTC	3 cut(s)	25, 142, 385
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	9 cut(s)	130, 156, 180, 249, 434, 453, 588, 618, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 252, 431, 630, 860
HpyF3I	CTNAG	2 cut(s)	348, 388
Hsp92II	CATG	3 cut(s)	102, 259, 628
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	210, 268
LpnPI	CCDG	9 cut(s)	228, 249, 255, 279, 524, 568, 597, 619, 679
Lsp1109I	GCAGC	2 cut(s)	168, 233
LweI	GCATC	2 cut(s)	133, 443
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	22, 600, 716
MhlI	GDGCHC	4 cut(s)	236, 273, 470, 511
MluCI	AATT	4 cut(s)	188, 282, 297, 497
MlyI	GAGTC	2 cut(s)	125, 143
MnlI	CCTC	2 cut(s)	456, 567
Mph1103I	ATGCAT	1 cut(s)	182
MseI	TTAA	2 cut(s)	56, 81
MslI	CAYNNNNRTG	1 cut(s)	439
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	243, 266
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	5 cut(s)	177, 252, 431, 630, 860
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	102, 259, 628
NlaIV	GGNNCC	2 cut(s)	415, 483
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	2 cut(s)	102, 259
PaqCI	CACCTGC	1 cut(s)	624
PciI	ACATGT	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	158, 248
Ple19I	CGATCG	1 cut(s)	307
PleI	GAGTC	2 cut(s)	124, 142
PpsI	GAGTC	2 cut(s)	124, 142
Ppu21I	YACGTR	9 cut(s)	692, 758, 779, 812, 836, 866, 890, 920, 944
PscI	ACATGT	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	415, 483
PvuI	CGATCG	1 cut(s)	307
RsaI	GTAC	2 cut(s)	362, 368
RsaNI	GTAC	2 cut(s)	361, 367
RseI	CAYNNNNRTG	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	56, 81
SatI	GCNGC	2 cut(s)	157, 247
Sau3AI	GATC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	2 cut(s)	125, 143
ScrFI	CCNGG	2 cut(s)	243, 266
SduI	GDGCHC	4 cut(s)	236, 273, 470, 511
SfaNI	GCATC	2 cut(s)	133, 443
SmiMI	CAYNNNNRTG	1 cut(s)	439
SnaBI	TACGTA	2 cut(s)	692, 779
Sse9I	AATT	4 cut(s)	188, 282, 297, 497
SsiI	CCGC	1 cut(s)	622
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	241, 264
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	3 cut(s)	19, 303, 501
TasI	AATT	4 cut(s)	188, 282, 297, 497
TatI	WGTACW	2 cut(s)	360, 366
Tru1I	TTAA	2 cut(s)	56, 81
Tru9I	TTAA	2 cut(s)	56, 81
TscAI	CASTG	3 cut(s)	278, 322, 444
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	156, 246
Tsp45I	GTSAC	1 cut(s)	217
TspRI	CASTG	3 cut(s)	278, 322, 444
VspI	ATTAAT	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	240
XapI	RAATTY	3 cut(s)	188, 297, 497
XceI	RCATGY	2 cut(s)	102, 259
XspI	CTAG	1 cut(s)	471
ZrmI	AGTACT	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.