Prupe.7G191900_v2.0.a1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
18321974 .. 18323549
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G191900.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1293 bp
ATGGCGTTTTTGAATGTTAACTTTGGGGAGGTTAAACATGATGATGATACTTATGGAGATGATCATGACTTGTTCTTCACACCCTTGTCATCCCCAACAAGGTTGTCCACAAAAAGGCGGCCCTCCAAAAATTGGTGTAACCCAATCTTGCAGCACATCAAGGCTCTTCTTCCATTCAAAATGCGAAGAAATCCCTCAAGTGATGAGACCAAGAAGACGAAGAAGAAGATTAACATGAAGACGAAGACGAAGAAATCGAGTTTCCACCCTCCAGCATACGGTGTAAGAACTAATAGTGATGAATATAATTTCTCCACTGATGATGCTTTTGACAGATTTATGCTTTATTTGATGCCCTTTGAAACTAGCGGAGGAGGTCGGCTCTACGTTGATCATAATTATGAAGAAGAAACTCATGAATTTCCAAGATCAATCAATCCCCAGAAAAAAGCTACTTCTGATGATGATGATCTCTTGAATGAATTTATGCTTTCTTGGGAGCCCTTCAAAAATAGACGAGATCCAAATTATTTTGATGAAGAAGAAGTTGAATTTCCAAGATCAAATATCGATCCCCCCAACACTCCTGAAGAAGTTGACGACATTGTTGCTCATGACAATAAATTCATGGCTTCTTCTAGGGTTTCTCATGAGGTTGGGAAGCCTTCCGATTCGAAGAATATCGAGTACGTCCCAGCGGTTAATAATAATTTTGGTTGTAATATCTGCTTTGAACCCAAGGCTGGACACCAGTGGTTTGACATCAAAAATTGCAGCCATGGTTATTGTACGGAGTGCATGGTCAATTACGTGGTCTCCAATCTTCAAGAGAACGTCACAACCATTCGATGCCCTGATCCTGATTGCGCATCAGGATCAATAGAGCCCGAGGATTGTGACTGGATACTTCCCCAAGAAGTGTTTGAGAGTGATTGCTCTGCGATGTTGATTATTGATAATGATGATGGGAGTGAGGTTGTGCGGCAGTCTCAGTGCCCGCATTGTCGAAGGCTTTTCTGTGCGCACTGTAAGGTTGCTTGGCACGAGGAGATGGAGTGCTGGGAGTTTCAGGAGTTGAATGACGATGAGAGGGGAAGGGAAGACATCCAGTTAAGGAACCTTGCAAACATGGAGGATTGGAAGAGATGTCCCAACTGTAAGTTTTATGTGGAAAAGAAGACCGGTTGCAATGTCATGAAGTGCAGGTGTAGAGCTACTTTTTGCTACAGATGTGGCCAGAGTTTAAGCGTGCCTAAAAACCAACGTCACTATTGTTCCTATTGTACGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-C3HC4

Protein Analysis

431

Amino Acids

50.03

Weight (kDa)

5.35

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1194
Acc16I TGCGCA 2 cut(s) 868, 1023
Acc36I ACCTGC 1 cut(s) 1194
AccB7I CCANNNNNTGG 1 cut(s) 132
AciI CCGC 5 cut(s) 118, 369, 698, 982, 998
AclWI GGATC 4 cut(s) 515, 566, 851, 883
AcoI YGGCCR 1 cut(s) 1234
AcsI RAATTY 4 cut(s) 419, 482, 551, 623
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 3 cut(s) 689, 790, 1285
AfiI CCNNNNNNNGG 5 cut(s) 99, 114, 132, 278, 743
AgeI ACCGGT 1 cut(s) 1181
AgsI TTSAA 9 cut(s) 13, 178, 362, 478, 508, 551, 734, 827, 1078
AluBI AGCT 2 cut(s) 452, 1214
AluI AGCT 2 cut(s) 452, 1214
Alw26I GTCTC 3 cut(s) 200, 820, 993
AlwI GGATC 4 cut(s) 515, 566, 851, 883
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 2 cut(s) 119, 1234
ApeKI GCWGC 2 cut(s) 151, 774
ApoI RAATTY 4 cut(s) 419, 482, 551, 623
AsiGI ACCGGT 1 cut(s) 1181
AspLEI GCGC 2 cut(s) 869, 1024
AspS9I GGNCC 1 cut(s) 120
AsuII TTCGAA 1 cut(s) 674
AvaI CYCGRG 1 cut(s) 887
BaeGI GKGCMC 1 cut(s) 998
BalI TGGCCA 1 cut(s) 1236
BanII GRGCYC 2 cut(s) 504, 888
BauI CACGAG 1 cut(s) 1043
BbsI GAAGAC 5 cut(s) 221, 245, 251, 1107, 1184
BbvI GCAGC 2 cut(s) 163, 786
BccI CCATC 2 cut(s) 959, 1045
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 2 cut(s) 61, 391
BcoDI GTCTC 3 cut(s) 200, 820, 993
BfaI CTAG 2 cut(s) 366, 639
BfmI CTRYAG 1 cut(s) 1225
BfuAI ACCTGC 1 cut(s) 1194
BfuI GTATCC 1 cut(s) 897
BisI GCNGC 4 cut(s) 119, 152, 775, 983
BlsI GCNGC 4 cut(s) 120, 153, 776, 984
BmeT110I CYCGRG 1 cut(s) 887
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 501, 1118
BmsI GCATC 4 cut(s) 313, 342, 839, 878
BpiI GAAGAC 5 cut(s) 221, 245, 251, 1107, 1184
BplI GAGNNNNNCTC 2 cut(s) 366, 398
BpmI CTGGAG 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 181
Bsa29I ATCGAT 1 cut(s) 570
BsaAI YACGTR 1 cut(s) 811
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 2 cut(s) 200, 820
BsaJI CCNNGG 3 cut(s) 738, 778, 888
BsaWI WCCGGW 1 cut(s) 1181
BsaXI ACNNNNNCTCC 4 cut(s) 800, 830, 1040, 1070
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 114, 132, 278, 743
Bse118I RCCGGY 1 cut(s) 1181
Bse1I ACTGG 3 cut(s) 751, 905, 1108
Bse3DI GCAATG 1 cut(s) 1195
Bse8I GATNNNNATC 1 cut(s) 468
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 738, 778, 888
BseGI GGATG 2 cut(s) 89, 1104
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 5 cut(s) 99, 114, 132, 278, 743
BseMI GCAATG 1 cut(s) 1195
BseMII CTCAG 1 cut(s) 1004
BseNI ACTGG 3 cut(s) 751, 905, 1108
BseRI GAGGAG 2 cut(s) 387, 1061
BseSI GKGCMC 1 cut(s) 998
BseXI GCAGC 2 cut(s) 163, 786
BseYI CCCAGC 2 cut(s) 694, 1059
BsgI GTGCAG 1 cut(s) 1222
BshFI GGCC 2 cut(s) 121, 1236
BshTI ACCGGT 1 cut(s) 1181
BshVI ATCGAT 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 1 cut(s) 1182
BslFI GGGAC 2 cut(s) 677, 1134
BslI CCNNNNNNNGG 5 cut(s) 99, 114, 132, 278, 743
BsmAI GTCTC 3 cut(s) 200, 820, 993
BsmFI GGGAC 2 cut(s) 677, 1134
BsnI GGCC 2 cut(s) 121, 1236
Bso31I GGTCTC 2 cut(s) 200, 820
BsoBI CYCGRG 1 cut(s) 887
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 3 cut(s) 504, 888, 998
Bsp143I GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
Bsp19I CCATGG 1 cut(s) 778
BspACI CCGC 5 cut(s) 118, 369, 698, 982, 998
BspANI GGCC 2 cut(s) 121, 1236
BspCNI CTCAG 1 cut(s) 1003
BspDI ATCGAT 1 cut(s) 570
BspHI TCATGA 5 cut(s) 64, 415, 613, 649, 1194
BspLI GGNNCC 2 cut(s) 501, 1118
BspMI ACCTGC 1 cut(s) 1194
BspPI GGATC 4 cut(s) 515, 566, 851, 883
BspQI GCTCTTC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 674
BspTNI GGTCTC 2 cut(s) 200, 820
BsrDI GCAATG 1 cut(s) 1195
BsrFI RCCGGY 1 cut(s) 1181
BsrI ACTGG 3 cut(s) 751, 905, 1108
BssAI RCCGGY 1 cut(s) 1181
BssECI CCNNGG 3 cut(s) 738, 778, 888
BssMI GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
BssSI CACGAG 1 cut(s) 1043
BssT1I CCWWGG 2 cut(s) 738, 778
Bst2BI CACGAG 1 cut(s) 1043
Bst4CI ACNGT 3 cut(s) 281, 1028, 1157
Bst6I CTCTTC 2 cut(s) 171, 1136
BstBAI YACGTR 1 cut(s) 811
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 998, 1250
BstDEI CTNAG 1 cut(s) 990
BstDSI CCRYGG 1 cut(s) 778
BstF5I GGATG 2 cut(s) 89, 1104
BstHHI GCGC 2 cut(s) 869, 1024
BstKTI GATC 9 cut(s) 64, 394, 431, 472, 523, 563, 574, 859, 878
BstMAI GTCTC 3 cut(s) 200, 820, 993
BstMBI GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
BstSFI CTRYAG 1 cut(s) 1225
BstSLI GKGCMC 1 cut(s) 998
BstV1I GCAGC 2 cut(s) 163, 786
BstV2I GAAGAC 5 cut(s) 221, 245, 251, 1107, 1184
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 1 cut(s) 570
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 2 cut(s) 121, 1236
BsuTUI ATCGAT 1 cut(s) 570
BtgI CCRYGG 1 cut(s) 778
BtgZI GCGATG 1 cut(s) 956
BtsCI GGATG 2 cut(s) 89, 1104
BtsIMutI CAGTG 4 cut(s) 315, 758, 998, 1024
BveI ACCTGC 1 cut(s) 1194
Cac8I GCNNGC 2 cut(s) 998, 1250
CciI TCATGA 5 cut(s) 64, 415, 613, 649, 1194
CfoI GCGC 2 cut(s) 869, 1024
Cfr10I RCCGGY 1 cut(s) 1181
Cfr13I GGNCC 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 570
Csp6I GTAC 3 cut(s) 688, 789, 1284
CspAI ACCGGT 1 cut(s) 1181
CviQI GTAC 3 cut(s) 688, 789, 1284
DdeI CTNAG 1 cut(s) 990
DpnI GATC 9 cut(s) 63, 393, 430, 471, 522, 562, 573, 858, 877
DpnII GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
EaeI YGGCCR 1 cut(s) 1234
Eam1104I CTCTTC 2 cut(s) 171, 1136
EarI CTCTTC 2 cut(s) 171, 1136
Eco130I CCWWGG 2 cut(s) 738, 778
Eco24I GRGCYC 2 cut(s) 504, 888
Eco31I GGTCTC 2 cut(s) 200, 820
Eco57I CTGAAG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 887
EcoT14I CCWWGG 2 cut(s) 738, 778
EcoT38I GRGCYC 2 cut(s) 504, 888
ErhI CCWWGG 2 cut(s) 738, 778
FaqI GGGAC 2 cut(s) 677, 1134
FauI CCCGC 1 cut(s) 1005
FbaI TGATCA 2 cut(s) 61, 391
Fnu4HI GCNGC 4 cut(s) 119, 152, 775, 983
FokI GGATG 2 cut(s) 76, 1091
FriOI GRGCYC 2 cut(s) 504, 888
Fsp4HI GCNGC 4 cut(s) 119, 152, 775, 983
FspAI RTGCGCAY 1 cut(s) 1023
FspBI CTAG 2 cut(s) 366, 639
FspI TGCGCA 2 cut(s) 868, 1023
GlaI GCGC 2 cut(s) 868, 1023
GluI GCNGC 4 cut(s) 119, 152, 775, 983
GsaI CCCAGC 2 cut(s) 698, 1063
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 121, 1236
HapII CCGG 1 cut(s) 1182
HhaI GCGC 2 cut(s) 869, 1024
Hin6I GCGC 2 cut(s) 867, 1022
HinP1I GCGC 2 cut(s) 867, 1022
HincII GTYRAC 2 cut(s) 19, 598
HindII GTYRAC 2 cut(s) 19, 598
HinfI GANTC 1 cut(s) 671
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 1 cut(s) 1182
Hpy166II GTNNAC 3 cut(s) 19, 108, 598
Hpy188I TCNGA 2 cut(s) 460, 670
Hpy8I GTNNAC 3 cut(s) 19, 108, 598
HpyAV CCTTC 4 cut(s) 514, 675, 1002, 1089
HpyCH4III ACNGT 3 cut(s) 281, 1028, 1157
HpyCH4IV ACGT 5 cut(s) 387, 690, 810, 834, 1264
HpyCH4V TGCA 6 cut(s) 151, 774, 798, 1124, 1188, 1203
HpyF3I CTNAG 1 cut(s) 990
HpySE526I ACGT 5 cut(s) 387, 690, 810, 834, 1264
HspAI GCGC 2 cut(s) 867, 1022
Ksp22I TGATCA 2 cut(s) 61, 391
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 2 cut(s) 163, 786
LweI GCATC 4 cut(s) 313, 342, 839, 878
MaeI CTAG 2 cut(s) 366, 639
MaeII ACGT 5 cut(s) 387, 690, 810, 834, 1264
MaeIII GTNAC 4 cut(s) 137, 835, 896, 1265
MalI GATC 9 cut(s) 63, 393, 430, 471, 522, 562, 573, 858, 877
MboI GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 504, 888, 998
MlsI TGGCCA 1 cut(s) 1236
MluNI TGGCCA 1 cut(s) 1236
Mox20I TGGCCA 1 cut(s) 1236
MscI TGGCCA 1 cut(s) 1236
MseI TTAA 6 cut(s) 18, 33, 231, 702, 1112, 1244
MslI CAYNNNNRTG 2 cut(s) 42, 399
Msp20I TGGCCA 1 cut(s) 1236
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 1 cut(s) 1182
NcoI CCATGG 1 cut(s) 778
NdeII GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
NlaIV GGNNCC 2 cut(s) 501, 1118
NmuCI GTSAC 3 cut(s) 835, 896, 1265
NsbI TGCGCA 2 cut(s) 868, 1023
NspV TTCGAA 1 cut(s) 674
PagI TCATGA 5 cut(s) 64, 415, 613, 649, 1194
PaqCI CACCTGC 1 cut(s) 1194
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PfeI GAWTC 1 cut(s) 671
PflMI CCANNNNNTGG 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 1181
PkrI GCNGC 4 cut(s) 120, 153, 776, 984
Ppu21I YACGTR 1 cut(s) 811
PspFI CCCAGC 2 cut(s) 694, 1059
PspN4I GGNNCC 2 cut(s) 501, 1118
PspPI GGNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 3 cut(s) 689, 790, 1285
RsaNI GTAC 3 cut(s) 688, 789, 1284
RseI CAYNNNNRTG 2 cut(s) 42, 399
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 6 cut(s) 18, 33, 231, 702, 1112, 1244
SatI GCNGC 4 cut(s) 119, 152, 775, 983
Sau3AI GATC 9 cut(s) 61, 391, 428, 469, 520, 560, 571, 856, 875
Sau96I GGNCC 1 cut(s) 120
SduI GDGCHC 3 cut(s) 504, 888, 998
SfaNI GCATC 4 cut(s) 313, 342, 839, 878
SfcI CTRYAG 1 cut(s) 1225
SfuI TTCGAA 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 42, 399
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SsiI CCGC 5 cut(s) 118, 369, 698, 982, 998
SspMI CTAG 2 cut(s) 366, 639
StyI CCWWGG 2 cut(s) 738, 778
TaaI ACNGT 3 cut(s) 281, 1028, 1157
TaiI ACGT 5 cut(s) 390, 693, 813, 837, 1267
TaqI TCGA 6 cut(s) 257, 570, 674, 684, 847, 1006
TauI GCSGC 2 cut(s) 121, 985
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 6 cut(s) 18, 33, 231, 702, 1112, 1244
Tru9I TTAA 6 cut(s) 18, 33, 231, 702, 1112, 1244
TscAI CASTG 4 cut(s) 322, 758, 998, 1031
TseFI GTSAC 3 cut(s) 835, 896, 1265
TseI GCWGC 2 cut(s) 151, 774
Tsp45I GTSAC 3 cut(s) 835, 896, 1265
TspDTI ATGAA 8 cut(s) 251, 315, 417, 432, 495, 552, 616, 1211
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 4 cut(s) 322, 758, 998, 1031
Van91I CCANNNNNTGG 1 cut(s) 132
XapI RAATTY 4 cut(s) 419, 482, 551, 623
XspI CTAG 2 cut(s) 366, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.