Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18591957 .. 18593834

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G197200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTTGTATGGATCCAGCAACACCACCACCAGCAGCAACAACAAGCCTTCATCTGCTTCCAGAGACGACGCAACTGCTCCAGCTCCAGCCCCAGCCCCAGTCCCAGCCCCATCAAAACGCCGTCGCTTTGCAGAGCCTGAGCGACCGAGTCAGTGAGCTGGGCCTGGACCTTGGCCTGAGCCTTCGTGGTGGTGGTGCAGGGAAGCAGTCAAAGCCATGTGCATGGGGTGAGCGTGGTAGAATCTTGACTGCTAAAGACTTCCCTTCCATGGTGGGCTCTGCAGTTCCTTATTCTAGAGGGTGGCTCTCCCACTGCTGCCTTGCTATGGTAGCTAATAGGGACAAGAATGAAGATGAGGCAACAGGAAAGCACGGTCTGGAGGAGAATCGTGATGCGTTGAAGGTCCTCCGAGCTGCCGACGAAGCCTCTCGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

147

Amino Acids

15.62

Weight (kDa)

6.41

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	8, 21
AfiI	CCNNNNNNNGG	2 cut(s)	271, 328
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	85, 160, 335, 416
AluI	AGCT	4 cut(s)	85, 160, 335, 416
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	8, 21
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	2 cut(s)	163, 175
ApeKI	GCWGC	3 cut(s)	35, 318, 416
AspS9I	GGNCC	3 cut(s)	163, 169, 406
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	169, 406
BamHI	GGATCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	47, 305, 403
BccI	CCATC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	36, 319, 417
BlsI	GCNGC	3 cut(s)	37, 320, 418
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	169, 406
BmgT120I	GGNCC	3 cut(s)	163, 169, 406
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	3 cut(s)	65, 71, 401
Bpu10I	CCTNAGC	2 cut(s)	140, 179
BsaJI	CCNNGG	2 cut(s)	172, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 328
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	172, 270
BseLI	CCNNNNNNNGG	2 cut(s)	271, 328
BseMII	CTCAG	2 cut(s)	131, 170
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	3 cut(s)	47, 305, 403
BseYI	CCCAGC	3 cut(s)	93, 105, 160
BsgI	GTGCAG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	165, 177
BsiEI	CGRYCG	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	88, 356
BslI	CCNNNNNNNGG	2 cut(s)	271, 328
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	88, 356
BsnI	GGCC	2 cut(s)	165, 177
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	270
BspANI	GGCC	2 cut(s)	165, 177
BspCNI	CTCAG	2 cut(s)	132, 171
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	2 cut(s)	8, 21
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	172, 270
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	172, 270
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	140, 179
BstDSI	CCRYGG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	13
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 332, 425
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	47, 305, 403
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	165, 177
BtgI	CCRYGG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	160, 313
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	163, 169, 406
CseI	GACGC	1 cut(s)	79
CviAII	CATG	3 cut(s)	219, 225, 271
DdeI	CTNAG	2 cut(s)	140, 179
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	172, 270
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	169, 406
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	172, 270
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	2 cut(s)	172, 270
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	3 cut(s)	222, 228, 274
FaiI	YATR	5 cut(s)	11, 220, 226, 272, 329
FaqI	GGGAC	2 cut(s)	88, 356
FatI	CATG	3 cut(s)	218, 224, 270
Fnu4HI	GCNGC	3 cut(s)	36, 319, 417
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	36, 319, 417
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	3 cut(s)	36, 319, 417
GsaI	CCCAGC	3 cut(s)	97, 109, 164
GsuI	CTGGAG	3 cut(s)	65, 71, 401
HaeIII	GGCC	2 cut(s)	165, 177
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	222, 228, 274
HinfI	GANTC	3 cut(s)	150, 243, 388
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	5 cut(s)	62, 247, 297, 380, 392
Hpy99I	CGWCG	3 cut(s)	73, 128, 425
HpyAV	CCTTC	4 cut(s)	59, 194, 276, 397
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	4 cut(s)	133, 200, 224, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 332, 425
HpyF3I	CTNAG	2 cut(s)	140, 179
Hsp92II	CATG	3 cut(s)	222, 228, 274
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	84, 90
Lsp1109I	GCAGC	3 cut(s)	47, 305, 403
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	297
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	293, 352, 376, 419, 439
MslI	CAYNNNNRTG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	214, 332, 425
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	3 cut(s)	222, 228, 274
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	243, 388
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	37, 320, 418
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	406
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	3 cut(s)	93, 105, 160
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	3 cut(s)	163, 169, 406
PspPPI	RGGWCCY	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	223
SatI	GCNGC	3 cut(s)	36, 319, 417
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	3 cut(s)	163, 169, 406
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	6 cut(s)	87, 162, 174, 337, 408, 418
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	169, 406
SmiMI	CAYNNNNRTG	1 cut(s)	223
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	172, 270
TaaI	ACNGT	1 cut(s)	377
TaqII	GACCGA	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	243, 388
TscAI	CASTG	2 cut(s)	160, 320
TseI	GCWGC	3 cut(s)	35, 318, 416
TspDTI	ATGAA	2 cut(s)	41, 366
TspRI	CASTG	2 cut(s)	160, 320
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	169, 406
XbaI	TCTAGA	1 cut(s)	296
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.