Prupe.7G197300_v2.0.a1

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
18593835 .. 18595622
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G197300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 558 bp
ATGAACGACTTGTTCTCTGGCGACAAGTTCTTCGGCGACATGGAGTCCGTGAAGGATGAGCTCAAGGAGCTGGAGCGCCTCCGCCAGAACCTCCAGTCCTCTCACGAGCACAGCAAGACGCTCGACAACGCCAAGGCTGTCAAGGACCTCCGATCTCGCATGGAAGCCGACGTCACCTTCGCCCTCAAGAAGGCCAAGGTCCTCAAGGTCCGCCTCAAGGCTCTCGACCGCTCCAACGCCGCCAACCGGAGCCTCCCCTGCTGCGGACCCGGTTCGTCCTCCGATCGGACCCGGATCTCCGTCGTCAACGGCCTCCGCAAGAAGCTCAAGGACTCCATGGACAGCTTCAACTCCCTCAGGCAGAAGATGCTGCTGGGGGTCTTGCTATACAGATCCATCTCCTTATGCAGTACAAATCAATATGATAGGTCCCTGGTCAGAGCCAATAGCCATGCAGGTGCGCCAAGGAGATGCCTGCAGTTGATGTGCCTGTGCCTGACAGCTCATCGACTATGCTGGCGGCAGGGAGCTCCAGCGGCGAAGGCGTGGTGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

186

Amino Acids

20.96

Weight (kDa)

10.04

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 446
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 231
AciI CCGC 8 cut(s) 82, 211, 229, 240, 264, 316, 520, 536
AclWI GGATC 2 cut(s) 302, 387
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 5 cut(s) 190, 217, 246, 263, 285
AgsI TTSAA 1 cut(s) 349
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 432
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 6 cut(s) 61, 70, 325, 345, 503, 530
AluI AGCT 6 cut(s) 61, 70, 325, 345, 503, 530
Alw21I GWGCWC 3 cut(s) 63, 111, 532
AlwI GGATC 2 cut(s) 302, 387
AoxI GGCC 2 cut(s) 192, 310
ApeKI GCWGC 2 cut(s) 261, 370
ArsI GACNNNNNNTTYG 4 cut(s) 14, 46, 161, 193
AspLEI GCGC 2 cut(s) 78, 463
AspS9I GGNCC 6 cut(s) 145, 199, 208, 266, 288, 429
AsuC2I CCSGG 2 cut(s) 270, 292
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 6 cut(s) 145, 199, 208, 266, 288, 429
AxyI CCTNAGG 1 cut(s) 356
BanII GRGCYC 2 cut(s) 63, 532
BauI CACGAG 1 cut(s) 104
Bbv12I GWGCWC 3 cut(s) 63, 111, 532
BbvI GCAGC 2 cut(s) 248, 357
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 434
BcnI CCSGG 2 cut(s) 270, 292
BfmI CTRYAG 1 cut(s) 476
BfoI RGCGCY 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 446
BisI GCNGC 5 cut(s) 240, 262, 371, 521, 537
BlsI GCNGC 5 cut(s) 241, 263, 372, 522, 538
Bme1390I CCNGG 3 cut(s) 270, 292, 434
Bme18I GGWCC 6 cut(s) 145, 199, 208, 266, 288, 429
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 6 cut(s) 145, 199, 208, 266, 288, 429
BmiI GGNNCC 4 cut(s) 251, 268, 290, 431
BmrFI CCNGG 3 cut(s) 270, 292, 434
BmsI GCATC 2 cut(s) 357, 461
BpmI CTGGAG 3 cut(s) 77, 92, 516
BpuEI CTTGAG 5 cut(s) 47, 170, 188, 200, 311
BpuMI CCSGG 2 cut(s) 270, 292
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 5 cut(s) 132, 195, 336, 432, 464
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 217, 246, 263, 285
Bse1I ACTGG 1 cut(s) 94
Bse21I CCTNAGG 1 cut(s) 356
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 5 cut(s) 132, 195, 336, 432, 464
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 5 cut(s) 190, 217, 246, 263, 285
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 248, 357
BseYI CCCAGC 1 cut(s) 373
Bsh1285I CGRYCG 2 cut(s) 229, 286
BshFI GGCC 2 cut(s) 194, 312
BsiEI CGRYCG 2 cut(s) 229, 286
BsiHKAI GWGCWC 3 cut(s) 63, 111, 532
BsiSI CCGG 3 cut(s) 247, 270, 292
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 5 cut(s) 190, 217, 246, 263, 285
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 194, 312
Bsp1286I GDGCHC 3 cut(s) 63, 111, 532
Bsp143I GATC 4 cut(s) 152, 283, 294, 392
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 8 cut(s) 82, 211, 229, 240, 264, 316, 520, 536
BspANI GGCC 2 cut(s) 194, 312
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 4 cut(s) 251, 268, 290, 431
BspMAI CTGCAG 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 446
BspPI GGATC 2 cut(s) 302, 387
BsrBI CCGCTC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 5 cut(s) 132, 195, 336, 432, 464
BssMI GATC 4 cut(s) 152, 283, 294, 392
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 4 cut(s) 132, 195, 336, 464
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 476, 518
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 336
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 2 cut(s) 78, 463
BstKTI GATC 4 cut(s) 155, 286, 297, 395
BstMBI GATC 4 cut(s) 152, 283, 294, 392
BstMCI CGRYCG 2 cut(s) 229, 286
BstMWI GCNNNNNNNGC 5 cut(s) 67, 258, 367, 536, 542
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 3 cut(s) 268, 290, 432
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 2 cut(s) 248, 357
BstX2I RGATCY 2 cut(s) 294, 392
BstYI RGATCY 2 cut(s) 294, 392
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 2 cut(s) 194, 312
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 446
Cac8I GCNNGC 2 cut(s) 476, 518
CfoI GCGC 2 cut(s) 78, 463
Cfr13I GGNCC 6 cut(s) 145, 199, 208, 266, 288, 429
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 411
CviAII CATG 4 cut(s) 40, 160, 337, 452
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 1 cut(s) 356
DpnI GATC 4 cut(s) 154, 285, 296, 394
DpnII GATC 4 cut(s) 152, 283, 294, 392
DriI GACNNNNNGTC 1 cut(s) 43
Eam1105I GACNNNNNGTC 1 cut(s) 43
EciI GGCGGA 2 cut(s) 71, 200
Ecl136II GAGCTC 2 cut(s) 61, 530
Eco130I CCWWGG 4 cut(s) 132, 195, 336, 464
Eco24I GRGCYC 2 cut(s) 63, 532
Eco47I GGWCC 6 cut(s) 145, 199, 208, 266, 288, 429
Eco53kI GAGCTC 2 cut(s) 61, 530
Eco81I CCTNAGG 1 cut(s) 356
EcoICRI GAGCTC 2 cut(s) 61, 530
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 3 cut(s) 145, 199, 429
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 4 cut(s) 132, 195, 336, 464
EcoT38I GRGCYC 2 cut(s) 63, 532
ErhI CCWWGG 4 cut(s) 132, 195, 336, 464
FaeI CATG 4 cut(s) 43, 163, 340, 455
FaiI YATR 8 cut(s) 41, 161, 338, 388, 406, 423, 453, 514
FaqI GGGAC 1 cut(s) 415
FatI CATG 4 cut(s) 39, 159, 336, 451
Fnu4HI GCNGC 5 cut(s) 240, 262, 371, 521, 537
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 2 cut(s) 63, 532
Fsp4HI GCNGC 5 cut(s) 240, 262, 371, 521, 537
GlaI GCGC 2 cut(s) 77, 462
GluI GCNGC 5 cut(s) 240, 262, 371, 521, 537
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 3 cut(s) 77, 92, 516
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 2 cut(s) 194, 312
HapII CCGG 3 cut(s) 247, 270, 292
HgaI GACGC 1 cut(s) 127
HhaI GCGC 2 cut(s) 78, 463
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 43, 163, 340, 455
Hin6I GCGC 2 cut(s) 76, 461
HinP1I GCGC 2 cut(s) 76, 461
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 2 cut(s) 44, 332
HpaII CCGG 3 cut(s) 247, 270, 292
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 4 cut(s) 152, 283, 288, 440
Hpy188III TCNNGA 3 cut(s) 104, 187, 224
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 2 cut(s) 173, 305
HpyAV CCTTC 4 cut(s) 46, 184, 187, 535
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 408, 455, 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 258, 367, 536, 542
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 43, 163, 340, 455
HspAI GCGC 2 cut(s) 76, 461
Kzo9I GATC 4 cut(s) 152, 283, 294, 392
LmnI GCTCC 6 cut(s) 67, 73, 236, 249, 527, 535
Lsp1109I GCAGC 2 cut(s) 248, 357
LweI GCATC 2 cut(s) 357, 461
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 172
MalI GATC 4 cut(s) 154, 285, 296, 394
MbiI CCGCTC 1 cut(s) 231
MboI GATC 4 cut(s) 152, 283, 294, 392
MboII GAAGA 2 cut(s) 22, 376
MflI RGATCY 2 cut(s) 294, 392
MhlI GDGCHC 3 cut(s) 63, 111, 532
MlyI GAGTC 2 cut(s) 53, 326
MmeI TCCRAC 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 3 cut(s) 247, 270, 292
MspR9I CCNGG 3 cut(s) 270, 292, 434
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 5 cut(s) 67, 258, 367, 536, 542
NciI CCSGG 2 cut(s) 270, 292
NcoI CCATGG 1 cut(s) 336
NdeII GATC 4 cut(s) 152, 283, 294, 392
NlaIII CATG 4 cut(s) 43, 163, 340, 455
NlaIV GGNNCC 4 cut(s) 251, 268, 290, 431
NmuCI GTSAC 1 cut(s) 172
PaqCI CACCTGC 1 cut(s) 446
PkrI GCNGC 5 cut(s) 241, 263, 372, 522, 538
Ple19I CGATCG 1 cut(s) 286
PleI GAGTC 2 cut(s) 52, 326
PpsI GAGTC 2 cut(s) 52, 326
PpuMI RGGWCCY 3 cut(s) 145, 199, 429
Psp124BI GAGCTC 2 cut(s) 63, 532
Psp5II RGGWCCY 3 cut(s) 145, 199, 429
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 4 cut(s) 251, 268, 290, 431
PspPI GGNCC 6 cut(s) 145, 199, 208, 266, 288, 429
PspPPI RGGWCCY 3 cut(s) 145, 199, 429
PstI CTGCAG 1 cut(s) 480
PsuI RGATCY 2 cut(s) 294, 392
PvuI CGATCG 1 cut(s) 286
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
RseI CAYNNNNRTG 1 cut(s) 456
SacI GAGCTC 2 cut(s) 63, 532
SatI GCNGC 5 cut(s) 240, 262, 371, 521, 537
Sau3AI GATC 4 cut(s) 152, 283, 294, 392
Sau96I GGNCC 6 cut(s) 145, 199, 208, 266, 288, 429
SchI GAGTC 2 cut(s) 53, 326
ScrFI CCNGG 3 cut(s) 270, 292, 434
SduI GDGCHC 3 cut(s) 63, 111, 532
SfaNI GCATC 2 cut(s) 357, 461
SfcI CTRYAG 1 cut(s) 476
SinI GGWCC 6 cut(s) 145, 199, 208, 266, 288, 429
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 5 cut(s) 62, 185, 203, 215, 326
SmoI CTYRAG 5 cut(s) 62, 185, 203, 215, 326
SsiI CCGC 8 cut(s) 82, 211, 229, 240, 264, 316, 520, 536
SstI GAGCTC 2 cut(s) 63, 532
StyD4I CCNGG 3 cut(s) 268, 290, 432
StyI CCWWGG 4 cut(s) 132, 195, 336, 464
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 123, 225, 508
TatI WGTACW 1 cut(s) 410
TauI GCSGC 3 cut(s) 242, 523, 539
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 2 cut(s) 261, 370
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 37, 289
VpaK11BI GGWCC 6 cut(s) 145, 199, 208, 266, 288, 429
XagI CCTNNNNNAGG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.