Prupe.7G201900_v2.0.a1
MYB Family

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
18807885 .. 18810090
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G201900.1

Sequence Viewer

Length: 792 bp
ATGGGGAGAAGACCATGCTATGAAAAGGACGGGATAAACAAGGGAGCATGGACTGCCCAGGAAGATGAAATCCTTTCTAATTACATGAACACATATGGAAAAGGAAAATGGAGAGACCTTCCTCAAAGAGCAGGGCTAAAACGTTGTGGGAGGAGTTGCAGGATGCGATGGGTGAACTATCTTAGGCCTGGCATTAAGAGAGGTAACATTTCTGCGGATGAAGAAGATCTCATTGTGAGACTACATAAACTTCTTGGAAACAGAATTCCGGGGAGGACAGACACTGAGATCAAGAACTACTGGAACACCCGTTTAAGTAAGAGATCATCCTCAGATCAAGAACTACTGGAACACCATAAACCTAGTGTTAATCCGAAAAATCAACATAATGAGAAAGGATTAATACCATCAGATCAGTCTGACAATGCTAAGGCGATTAGACCAAAACCTTTCAAGTGCACAAAGGTTGATGTGGGCATCCCATCGCATCTTCAAGATGACCAAGATCATCAAATCATGGTTGACACAACAAATAATAATAATTTTGTTAGCTCATCAGTTCCTGCTGGTTCTTCATCCAATGACCTGTTCATATTAGACTTGCTAAACAGTACGGAATTCCAGCAACCTCAAATGAAGGAATGGCAACTGGCTATGGTGGAGAATTATTGGAGGGGTAGCCCTATTATTGCTGCTGTCGATCCATTTGAACCTAATATTGATGGGGAGGTAGCTTTCAATGCACTTTCATCTTTTCTGAACAGTGAAGATTCTCAATATTGGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

264

Amino Acids

30.06

Weight (kDa)

7.01

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclI AACGTT 1 cut(s) 142
AclWI GGATC 1 cut(s) 695
AcsI RAATTY 2 cut(s) 264, 617
AfaI GTAC 1 cut(s) 613
AgsI TTSAA 4 cut(s) 454, 494, 710, 739
AjnI CCWGG 2 cut(s) 57, 187
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 2 cut(s) 552, 734
AluI AGCT 2 cut(s) 552, 734
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 2 cut(s) 108, 232
Alw44I GTGCAC 1 cut(s) 457
AlwI GGATC 1 cut(s) 695
AlwNI CAGNNNCTG 2 cut(s) 284, 563
AoxI GGCC 1 cut(s) 185
ApaLI GTGCAC 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 2 cut(s) 264, 617
AseI ATTAAT 2 cut(s) 401, 786
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 679
BccI CCATC 4 cut(s) 162, 415, 490, 716
BciT130I CCWGG 2 cut(s) 59, 189
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 108, 232
BfaI CTAG 1 cut(s) 363
BglII AGATCT 1 cut(s) 226
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 3 cut(s) 59, 189, 270
BmrFI CCNGG 3 cut(s) 59, 189, 270
BmsI GCATC 3 cut(s) 153, 486, 496
BpiI GAAGAC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 57, 269
Bse1I ACTGG 3 cut(s) 305, 351, 654
BseBI CCWGG 2 cut(s) 59, 189
BseDI CCNNGG 2 cut(s) 57, 269
BseGI GGATG 5 cut(s) 168, 223, 326, 477, 575
BseMII CTCAG 2 cut(s) 276, 345
BseNI ACTGG 3 cut(s) 305, 351, 654
BseRI GAGGAG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 1 cut(s) 679
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 108, 232
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 277, 344
BspPI GGATC 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 108
BsrI ACTGG 3 cut(s) 305, 351, 654
BssECI CCNNGG 2 cut(s) 57, 269
BssMI GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
Bst2UI CCWGG 2 cut(s) 59, 189
Bst4CI ACNGT 2 cut(s) 611, 764
BstAPI GCANNNNNTGC 1 cut(s) 53
BstDEI CTNAG 4 cut(s) 182, 285, 331, 429
BstF5I GGATG 5 cut(s) 168, 223, 326, 477, 575
BstKTI GATC 7 cut(s) 229, 291, 326, 337, 415, 508, 703
BstMAI GTCTC 2 cut(s) 108, 232
BstMBI GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
BstMWI GCNNNNNNNGC 2 cut(s) 53, 740
BstNI CCWGG 2 cut(s) 59, 189
BstSCI CCNGG 3 cut(s) 57, 187, 268
BstSLI GKGCMC 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 187
BtgZI GCGATG 2 cut(s) 181, 468
BtsCI GGATG 5 cut(s) 168, 223, 326, 477, 575
BtsIMutI CAGTG 2 cut(s) 282, 769
CaiI CAGNNNCTG 2 cut(s) 284, 563
Csp6I GTAC 1 cut(s) 612
CviAII CATG 4 cut(s) 15, 48, 85, 517
CviJI RGCY 6 cut(s) 136, 187, 552, 653, 681, 734
CviKI_1 RGCY 6 cut(s) 136, 187, 552, 653, 681, 734
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 4 cut(s) 182, 285, 331, 429
DpnI GATC 7 cut(s) 228, 290, 325, 336, 414, 507, 702
DpnII GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
Eco147I AGGCCT 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 108
EcoRI GAATTC 2 cut(s) 264, 617
EcoRII CCWGG 2 cut(s) 57, 187
FaeI CATG 4 cut(s) 18, 51, 88, 520
FatI CATG 4 cut(s) 14, 47, 84, 516
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 5 cut(s) 175, 230, 313, 464, 562
Fsp4HI GCNGC 1 cut(s) 693
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 693
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 269
Hin1II CATG 4 cut(s) 18, 51, 88, 520
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 1 cut(s) 770
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 3 cut(s) 175, 459, 523
Hpy188I TCNGA 5 cut(s) 334, 375, 412, 421, 759
Hpy188III TCNNGA 3 cut(s) 292, 338, 494
Hpy8I GTNNAC 3 cut(s) 175, 459, 523
HpyAV CCTTC 2 cut(s) 128, 631
HpyCH4III ACNGT 2 cut(s) 611, 764
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 159, 459, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 740
HpyF3I CTNAG 4 cut(s) 182, 285, 331, 429
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 4 cut(s) 18, 51, 88, 520
Kzo9I GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 3 cut(s) 153, 486, 496
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 203
MalI GATC 7 cut(s) 228, 290, 325, 336, 414, 507, 702
MboI GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
MboII GAAGA 7 cut(s) 21, 74, 233, 236, 482, 564, 779
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 6 cut(s) 79, 264, 541, 617, 664, 787
MnlI CCTC 8 cut(s) 132, 144, 194, 267, 340, 639, 666, 721
MseI TTAA 5 cut(s) 195, 314, 369, 401, 786
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 3 cut(s) 59, 189, 270
MvaI CCWGG 2 cut(s) 59, 189
MwoI GCNNNNNNNGC 2 cut(s) 53, 740
NciI CCSGG 1 cut(s) 270
NdeI CATATG 1 cut(s) 94
NdeII GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
NlaIII CATG 4 cut(s) 18, 51, 88, 520
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 1 cut(s) 694
PshBI ATTAAT 2 cut(s) 401, 786
Psp1406I AACGTT 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 57, 187
PspGI CCWGG 2 cut(s) 57, 187
PstNI CAGNNNCTG 2 cut(s) 284, 563
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
SaqAI TTAA 5 cut(s) 195, 314, 369, 401, 786
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 7 cut(s) 226, 288, 323, 334, 412, 505, 700
ScrFI CCNGG 3 cut(s) 59, 189, 270
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 3 cut(s) 153, 486, 496
Sse9I AATT 6 cut(s) 79, 264, 541, 617, 664, 787
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 215
SspI AATATT 2 cut(s) 718, 779
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 57, 187, 268
TaaI ACNGT 2 cut(s) 611, 764
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 699
TasI AATT 6 cut(s) 79, 264, 541, 617, 664, 787
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 5 cut(s) 195, 314, 369, 401, 786
Tru9I TTAA 5 cut(s) 195, 314, 369, 401, 786
TscAI CASTG 2 cut(s) 289, 769
TseI GCWGC 1 cut(s) 692
TspDTI ATGAA 8 cut(s) 36, 81, 101, 234, 564, 580, 650, 738
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 2 cut(s) 289, 769
VneI GTGCAC 1 cut(s) 457
VspI ATTAAT 2 cut(s) 401, 786
XapI RAATTY 2 cut(s) 264, 617
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.