Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19697554 .. 19698891

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G219200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGACTTCGAGCAGTTTTATCGTTGTTACTCTGTCTCCTCAATTGGCAAGCCACATGCGGAAAACGGTGATAAAATTATAATGCCGCCGTCGGCTCTCCATCGCCTTGTTTGGGGTCCACAGGTGGCCTACCCTATGCTGTTTCAGCTCAACAATCCCAATTCTGAATCTGGACGAGTTACTCATTGCGGGGTCTTGGAATTTGTTGCCGATGAGGGCTTTGTATTTTTACCATCTTGGATGATGCACAACCTGCTTTTACAAGAGGGTAACCTTGTTCATGTCAAAAGCCAAAGCCTTGGGAAGGGAACATATGTCAAACTGCAACCTCACACCAAGGACTTTCTTGATATCTCAAACCCTAAAGCCGCTCTGGAGACGGCGTTGAGGAGCTACTCTTGTTTAACCATTGGTGACACTATCATGCTTCCTTATAACAGTAAGAAGTATTACATCAACATAATTGAAACAAAGCCCTCCTCTGCAATCTGTATAGTTGATACCGACTGCGAGGTTGATTTTGCCCCTCCTCTTGATTATGTGGAGCCTGAAAAGAAGCCAGCACCATCCACTCTGCCAACGAAGAGACCACAAGAAGTTGAAGAAGATGAACAAGAGACACCTGAAAAGATAGCAAAGTTCAGTCCCTTTACTGGTTCAGCCAGACGATTGGATGGAGAACCGGTCTTGACACAATCCGTTGCACCTGCAGTTCCCTCTCCTCCGGAACTCAGGCAGCGCCAACTGGAGAGTGAAAATGGAACCAACAAAAAGGGTTCTAAGTCATCAGCTTCTGCTTCACTTCAACATTCTGGAAAGCTTGTGTTTGGTTCAAATGTGAACCGGCCTGTGAATGCAATCCCAAAAGTTGCCCCAAACAACCGCAGCAGGCAAGAGCCCCCTCACAAGGCAGAAGAGCCAAAGTTGCAAGCATTCACAGGGAAGAAGTATACCCTGAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

322

Amino Acids

35.58

Weight (kDa)

7.65

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	80, 435
AarI	CACCTGC	1 cut(s)	715
Acc36I	ACCTGC	2 cut(s)	261, 715
AccBSI	CCGCTC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	950
AccIII	TCCGGA	1 cut(s)	724
AciI	CCGC	5 cut(s)	59, 86, 189, 369, 883
AcsI	RAATTY	1 cut(s)	200
AfiI	CCNNNNNNNGG	5 cut(s)	112, 304, 653, 907, 960
AgeI	ACCGGT	1 cut(s)	682
AgsI	TTSAA	4 cut(s)	467, 602, 806, 834
AluBI	AGCT	4 cut(s)	148, 393, 791, 820
AluI	AGCT	4 cut(s)	148, 393, 791, 820
Alw26I	GTCTC	4 cut(s)	40, 371, 580, 611
AlwNI	CAGNNNCTG	1 cut(s)	794
Aor13HI	TCCGGA	1 cut(s)	724
AoxI	GGCC	2 cut(s)	126, 845
ApeKI	GCWGC	2 cut(s)	736, 885
ApoI	RAATTY	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	80, 425
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	748, 897
BccI	CCATC	4 cut(s)	108, 241, 574, 668
BceAI	ACGGC	2 cut(s)	73, 396
BcgI	CGANNNNNNTGC	1 cut(s)	36
BcoDI	GTCTC	4 cut(s)	40, 371, 580, 611
BfmI	CTRYAG	1 cut(s)	708
BfoI	RGCGCY	1 cut(s)	742
BfuAI	ACCTGC	2 cut(s)	261, 715
BisI	GCNGC	4 cut(s)	86, 369, 737, 886
BlsI	GCNGC	4 cut(s)	87, 370, 738, 887
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	117, 546, 763
BmsI	GCATC	1 cut(s)	234
BpmI	CTGGAG	2 cut(s)	395, 767
BsaI	GGTCTC	1 cut(s)	580
BsaJI	CCNNGG	2 cut(s)	298, 336
BsaWI	WCCGGW	2 cut(s)	682, 724
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 368, 398, 669, 699
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 304, 653, 907, 960
Bse118I	RCCGGY	2 cut(s)	682, 843
Bse1I	ACTGG	2 cut(s)	658, 750
Bse3DI	GCAATG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	298, 336
BseGI	GGATG	3 cut(s)	246, 566, 679
BseLI	CCNNNNNNNGG	5 cut(s)	112, 304, 653, 907, 960
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	745
BseNI	ACTGG	2 cut(s)	658, 750
BseRI	GAGGAG	5 cut(s)	28, 403, 469, 519, 711
BseXI	GCAGC	2 cut(s)	748, 897
BshFI	GGCC	2 cut(s)	128, 847
BshTI	ACCGGT	1 cut(s)	682
BsiSI	CCGG	3 cut(s)	683, 725, 844
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	5 cut(s)	112, 304, 653, 907, 960
BsmAI	GTCTC	4 cut(s)	40, 371, 580, 611
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	2 cut(s)	859, 932
BsnI	GGCC	2 cut(s)	128, 847
Bso31I	GGTCTC	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp13I	TCCGGA	1 cut(s)	724
BspACI	CCGC	5 cut(s)	59, 86, 189, 369, 883
BspANI	GGCC	2 cut(s)	128, 847
BspCNI	CTCAG	1 cut(s)	744
BspEI	TCCGGA	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	117, 546, 763
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	2 cut(s)	261, 715
BspQI	GCTCTTC	1 cut(s)	909
BspTNI	GGTCTC	1 cut(s)	580
BsrBI	CCGCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	682, 843
BsrI	ACTGG	2 cut(s)	658, 750
BssAI	RCCGGY	2 cut(s)	682, 843
BssECI	CCNNGG	2 cut(s)	298, 336
BssNAI	GTATAC	1 cut(s)	951
BssT1I	CCWWGG	2 cut(s)	298, 336
Bst1107I	GTATAC	1 cut(s)	951
Bst4CI	ACNGT	2 cut(s)	68, 440
Bst6I	CTCTTC	2 cut(s)	578, 909
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	50, 561, 890, 930
BstDEI	CTNAG	2 cut(s)	731, 780
BstEII	GGTNACC	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	3 cut(s)	246, 566, 679
BstH2I	RGCGCY	1 cut(s)	742
BstHHI	GCGC	1 cut(s)	741
BstMAI	GTCTC	4 cut(s)	40, 371, 580, 611
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 253, 925
BstNSI	RCATGY	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	748, 897
BstXI	CCANNNNNNTGG	2 cut(s)	299, 670
BstZ17I	GTATAC	1 cut(s)	951
BsuRI	GGCC	2 cut(s)	128, 847
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	246, 566, 679
BveI	ACCTGC	2 cut(s)	261, 715
Cac8I	GCNNGC	4 cut(s)	50, 561, 890, 930
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	741
Cfr10I	RCCGGY	2 cut(s)	682, 843
Cfr13I	GGNCC	1 cut(s)	116
CspAI	ACCGGT	1 cut(s)	682
CviAII	CATG	3 cut(s)	56, 281, 424
DdeI	CTNAG	2 cut(s)	731, 780
Eam1104I	CTCTTC	2 cut(s)	578, 909
EarI	CTCTTC	2 cut(s)	578, 909
Eco130I	CCWWGG	2 cut(s)	298, 336
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	298, 336
EcoT38I	GRGCYC	1 cut(s)	900
ErhI	CCWWGG	2 cut(s)	298, 336
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	3 cut(s)	59, 284, 427
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	3 cut(s)	55, 280, 423
FauI	CCCGC	1 cut(s)	182
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	950
Fnu4HI	GCNGC	4 cut(s)	86, 369, 737, 886
FokI	GGATG	3 cut(s)	253, 553, 686
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	4 cut(s)	86, 369, 737, 886
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	4 cut(s)	86, 369, 737, 886
GsuI	CTGGAG	2 cut(s)	395, 767
HaeII	RGCGCY	1 cut(s)	742
HaeIII	GGCC	2 cut(s)	128, 847
HapII	CCGG	3 cut(s)	683, 725, 844
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	3 cut(s)	59, 284, 427
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	3 cut(s)	683, 725, 844
HphI	GGTGA	2 cut(s)	80, 425
Hpy166II	GTNNAC	3 cut(s)	119, 841, 951
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	7 cut(s)	171, 347, 374, 533, 688, 725, 813
Hpy8I	GTNNAC	3 cut(s)	119, 841, 951
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	68, 440
HpyCH4V	TGCA	7 cut(s)	247, 325, 485, 704, 710, 857, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 253, 925
HpyF3I	CTNAG	2 cut(s)	731, 780
Hsp92II	CATG	3 cut(s)	59, 284, 427
HspAI	GCGC	1 cut(s)	739
Kpn2I	TCCGGA	1 cut(s)	724
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	2 cut(s)	390, 544
Lsp1109I	GCAGC	2 cut(s)	748, 897
LweI	GCATC	1 cut(s)	234
MaeIII	GTNAC	4 cut(s)	26, 178, 269, 413
MbiI	CCGCTC	1 cut(s)	371
MboII	GAAGA	5 cut(s)	595, 614, 617, 926, 955
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	900
MluCI	AATT	5 cut(s)	42, 75, 160, 200, 462
MroI	TCCGGA	1 cut(s)	724
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	3 cut(s)	683, 725, 844
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	2 cut(s)	859, 932
MwoI	GCNNNNNNNGC	3 cut(s)	145, 253, 925
NdeI	CATATG	1 cut(s)	313
NlaIII	CATG	3 cut(s)	59, 284, 427
NlaIV	GGNNCC	3 cut(s)	117, 546, 763
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	909
PctI	GAATGC	2 cut(s)	859, 932
PfeI	GAWTC	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	682
PkrI	GCNGC	4 cut(s)	87, 370, 738, 887
PsiI	TTATAA	2 cut(s)	80, 435
PspEI	GGTNACC	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	117, 546, 763
PspPI	GGNCC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	794
RseI	CAYNNNNRTG	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	909
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	4 cut(s)	86, 369, 737, 886
Sau96I	GGNCC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	5 cut(s)	42, 75, 160, 200, 462
SsiI	CCGC	5 cut(s)	59, 86, 189, 369, 883
StyI	CCWWGG	2 cut(s)	298, 336
TaaI	ACNGT	2 cut(s)	68, 440
TaqI	TCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	42, 75, 160, 200, 462
TauI	GCSGC	2 cut(s)	88, 371
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	2 cut(s)	736, 885
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	269, 624
TspGWI	ACGGA	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.