Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19893134 .. 19894205

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G223200.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTCTATGCCCAATATATAATGATTTTAATGCACGTCAAAAGTGCGGATCAGCTTCAAATGCCCAAAGAGAGGTTGATGGCGAACATTGTGTGTTTGGAACACGGATGGGAGAAGCAGGCCAGTAAATTCCTTCAGATTCCAAGTGGGCGAGATGCTGCTCCTCTTGCGGATACCCTGAGTTTATGGGTTCCTCGAGAAGCTAGTGGTCCAATCACACATGCTACGCATTCCTGTGATAGCCAGTCAATTTATGTTAGCTTTGAAGATGGAAGTGTGGGGGTTCTCACTGCTTCTACACTTAGATTGAGATGCCGAATACTACCTACTGCTTATTTACCTCCAAATCCAAGCTTAAGGCCATTAGAATCAGAAGGAAGATGGGGCACTTCCCCTCCGACTGAGAATGGTGCTGGGCCGAGCACAACTTCTGGAGCAGCCGGTTCAGATCAACCCCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

155

Amino Acids

16.7

Weight (kDa)

6.4

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	47, 170
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	59, 266
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	4 cut(s)	55, 203, 261, 354
AluI	AGCT	4 cut(s)	55, 203, 261, 354
Alw21I	GWGCWC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	3 cut(s)	120, 359, 416
ApeKI	GCWGC	2 cut(s)	158, 437
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	209, 416
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	145, 449
BccI	CCATC	4 cut(s)	73, 102, 263, 375
BciVI	GTATCC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	159, 438
BlsI	GCNGC	2 cut(s)	160, 439
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	195
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	209, 416
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	2 cut(s)	145, 302
BpmI	CTGGAG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	123, 244
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	170, 393
BseNI	ACTGG	2 cut(s)	123, 244
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	145, 449
BseYI	CCCAGC	1 cut(s)	413
BshFI	GGCC	3 cut(s)	122, 361, 418
BsiHKAI	GWGCWC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	122, 361, 418
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	389, 425
Bsp143I	GATC	2 cut(s)	49, 448
BspACI	CCGC	2 cut(s)	47, 170
BspANI	GGCC	3 cut(s)	122, 361, 418
BspCNI	CTCAG	2 cut(s)	171, 394
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	57
BspTI	CTTAAG	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	123, 244
BssAI	RCCGGY	1 cut(s)	440
BssMI	GATC	2 cut(s)	49, 448
BstAFI	CTTAAG	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	179, 302, 402
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	2 cut(s)	52, 451
BstMBI	GATC	2 cut(s)	49, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 167
BstNSI	RCATGY	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	145, 449
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	122, 361, 418
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	209, 416
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	9 cut(s)	55, 122, 203, 243, 261, 354, 361, 418, 440
CviKI_1	RGCY	9 cut(s)	55, 122, 203, 243, 261, 354, 361, 418, 440
DdeI	CTNAG	3 cut(s)	179, 302, 402
DpnI	GATC	2 cut(s)	51, 450
DpnII	GATC	2 cut(s)	49, 448
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	195
FaeI	CATG	1 cut(s)	224
FaiI	YATR	6 cut(s)	9, 18, 20, 187, 222, 255
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	159, 438
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	159, 438
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	159, 438
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	3 cut(s)	122, 361, 418
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	2 cut(s)	139, 368
HpaII	CCGG	1 cut(s)	441
Hpy188I	TCNGA	4 cut(s)	138, 373, 399, 448
Hpy188III	TCNNGA	2 cut(s)	197, 432
HpyAV	CCTTC	2 cut(s)	143, 368
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 167
HpyF3I	CTNAG	3 cut(s)	179, 302, 402
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	49, 448
LmnI	GCTCC	2 cut(s)	166, 434
LpnPI	CCDG	8 cut(s)	104, 136, 191, 247, 257, 399, 417, 454
Lsp1109I	GCAGC	2 cut(s)	145, 449
LweI	GCATC	2 cut(s)	145, 302
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	36
MalI	GATC	2 cut(s)	51, 450
MboI	GATC	2 cut(s)	49, 448
MboII	GAAGA	2 cut(s)	278, 390
MhlI	GDGCHC	2 cut(s)	389, 425
MluCI	AATT	2 cut(s)	128, 249
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	5 cut(s)	66, 174, 204, 351, 405
MseI	TTAA	2 cut(s)	29, 356
MslI	CAYNNNNRTG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	355
MspI	CCGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	61, 167
NdeII	GATC	2 cut(s)	49, 448
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	444
NspI	RCATGY	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	195
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	139, 368
PkrI	GCNGC	2 cut(s)	160, 439
PspFI	CCCAGC	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	209, 416
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	29, 356
SatI	GCNGC	2 cut(s)	159, 438
Sau3AI	GATC	2 cut(s)	49, 448
Sau96I	GGNCC	2 cut(s)	209, 416
SduI	GDGCHC	2 cut(s)	389, 425
SetI	ASST	9 cut(s)	39, 57, 77, 205, 263, 328, 343, 356, 464
SfaNI	GCATC	2 cut(s)	145, 302
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	195, 355
SmoI	CTYRAG	2 cut(s)	195, 355
Sse9I	AATT	2 cut(s)	128, 249
SsiI	CCGC	2 cut(s)	47, 170
SspMI	CTAG	1 cut(s)	204
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	128, 249
TfiI	GAWTC	2 cut(s)	139, 368
Tru1I	TTAA	2 cut(s)	29, 356
Tru9I	TTAA	2 cut(s)	29, 356
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	2 cut(s)	158, 437
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	195
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.