Prupe.7G228700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
20174415 .. 20175290
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G228700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 876 bp
ATGTCAAGAAGAACAGCACAAGTCCTCGACTCGCTCAATTCTATGAGCACCACCCAGATTTTCAGAGAATCCATCAGAGTTATACTTCTCCATCCAACCCATTTCCACTCCATCTCCATCTTCCTCTTTTCCCCTCTGCCAGCCTCCCTCTTCATCTCACACTTTCTTCTTCACCATTTCCCCCAAATACCTTCCTCAACAATCAAAATCACAGATCATATACTTGCACATCCCCTGCCCAAACTACTATCCAAAACCATTGTTCACATTGTTCTCTGCTTCCCTTCATCTATCACCTTCTCACTTCTTGGAAGAGCTGCTACTATTCAAGCAGTTTCAGACAGTTACAATGGAATAAACCTTGACAGAAGAAGGTTACTTGTGAGAAGTGGGCTCAATTGGATCAAGCTTCTAAACACAGGTCTTTGTGAACTTATCATTGTACTTGGGCTCCTTGGAGTTTTGGTTGCGAGCCTAGCAGTTGTACCAAAGATACTATTTGCATGGGGTGTCTGCTCAGAGGTCTTAGGATTCTGGGGTGTCCTTGGGTTTCTAGGGGTACCCTTTTGTGTGGCGTTTGCGCATGTTATGGTTGTGGGGAACCTAGCTAGGGTTTTATCAGTGCTGGAGGGTGAGTGTTATGGATTTGAGACATTGATAAAGGCCAAGAGACTCATGGAAAGAAAGCGAAAAACAGCTTTGGTTATGGCTTTGTTGAGTAACGTGGGCTTTAGGCTAGTTGAATGTTTGTTTGACTTCAGGATGAGCAAGGGGATAAATTTGTGGGAAGGTCCCCTGCTGGTTTCCATGTACTCTTTGCTGCTTGTTTTCGACACCGTCATGAATGTCGTATTCTATTATGCTTGTAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.47

Weight (kDa)

9.58

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 582
Acc65I GGTACC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 559
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 1 cut(s) 742
AfaI GTAC 4 cut(s) 444, 486, 561, 812
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 2 cut(s) 329, 743
AluBI AGCT 5 cut(s) 317, 409, 608, 698, 871
AluI AGCT 5 cut(s) 317, 409, 608, 698, 871
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 644, 664
AlwI GGATC 1 cut(s) 410
AoxI GGCC 1 cut(s) 663
ApeKI GCWGC 2 cut(s) 317, 820
ApoI RAATTY 1 cut(s) 778
Asp718I GGTACC 1 cut(s) 559
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 1 cut(s) 791
AsuHPI GGTGA 3 cut(s) 164, 286, 644
AvaII GGWCC 1 cut(s) 791
BanI GGYRCC 1 cut(s) 559
BanII GRGCYC 2 cut(s) 396, 453
BarI GAAGNNNNNNTAC 2 cut(s) 304, 336
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 304, 807
BccI CCATC 4 cut(s) 80, 99, 119, 125
BcoDI GTCTC 2 cut(s) 644, 664
BfaI CTAG 5 cut(s) 476, 554, 605, 609, 737
BisI GCNGC 2 cut(s) 318, 821
BlsI GCNGC 2 cut(s) 319, 822
Bme18I GGWCC 1 cut(s) 791
BmgT120I GGNCC 1 cut(s) 791
BmiI GGNNCC 4 cut(s) 452, 561, 602, 793
BpmI CTGGAG 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 454, 544
BsaXI ACNNNNNCTCC 8 cut(s) 98, 128, 435, 450, 465, 480, 620, 650
Bsc4I CCNNNNNNNGG 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 454, 544
BseGI GGATG 3 cut(s) 91, 229, 768
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 304, 807
BshFI GGCC 1 cut(s) 665
BshNI GGYRCC 1 cut(s) 559
BsiHKAI GWGCWC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 2 cut(s) 644, 664
BsmFI GGGAC 1 cut(s) 777
BsnI GGCC 1 cut(s) 665
Bsp1286I GDGCHC 3 cut(s) 50, 396, 453
Bsp143I GATC 2 cut(s) 214, 402
BspANI GGCC 1 cut(s) 665
BspCNI CTCAG 1 cut(s) 530
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 4 cut(s) 452, 561, 602, 793
BspPI GGATC 1 cut(s) 410
BspQI GCTCTTC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 454, 544
BssMI GATC 2 cut(s) 214, 402
BssT1I CCWWGG 2 cut(s) 454, 544
Bst4CI ACNGT 2 cut(s) 344, 838
Bst6I CTCTTC 2 cut(s) 155, 307
BstC8I GCNNGC 2 cut(s) 141, 472
BstDEI CTNAG 2 cut(s) 517, 526
BstF5I GGATG 3 cut(s) 91, 229, 768
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 2 cut(s) 217, 405
BstMAI GTCTC 2 cut(s) 644, 664
BstMBI GATC 2 cut(s) 214, 402
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 587
BstV1I GCAGC 2 cut(s) 304, 807
BsuRI GGCC 1 cut(s) 665
BtsCI GGATG 3 cut(s) 91, 229, 768
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 2 cut(s) 141, 472
CciI TCATGA 1 cut(s) 840
CfoI GCGC 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 791
Csp6I GTAC 4 cut(s) 443, 485, 560, 811
CviAII CATG 5 cut(s) 504, 584, 676, 808, 841
CviQI GTAC 4 cut(s) 443, 485, 560, 811
DdeI CTNAG 2 cut(s) 517, 526
DpnI GATC 2 cut(s) 216, 404
DpnII GATC 2 cut(s) 214, 402
Eam1104I CTCTTC 2 cut(s) 155, 307
EarI CTCTTC 2 cut(s) 155, 307
Eco130I CCWWGG 2 cut(s) 454, 544
Eco24I GRGCYC 2 cut(s) 396, 453
Eco47I GGWCC 1 cut(s) 791
Eco57I CTGAAG 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 791
EcoT14I CCWWGG 2 cut(s) 454, 544
EcoT38I GRGCYC 2 cut(s) 396, 453
ErhI CCWWGG 2 cut(s) 454, 544
FaeI CATG 5 cut(s) 507, 587, 679, 811, 844
FaqI GGGAC 1 cut(s) 777
FatI CATG 5 cut(s) 503, 583, 675, 807, 840
Fnu4HI GCNGC 2 cut(s) 318, 821
FokI GGATG 3 cut(s) 78, 216, 775
FriOI GRGCYC 2 cut(s) 396, 453
Fsp4HI GCNGC 2 cut(s) 318, 821
FspBI CTAG 5 cut(s) 476, 554, 605, 609, 737
FspI TGCGCA 1 cut(s) 582
GlaI GCGC 1 cut(s) 582
GluI GCNGC 2 cut(s) 318, 821
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 1 cut(s) 665
HhaI GCGC 1 cut(s) 583
Hin1II CATG 5 cut(s) 507, 587, 679, 811, 844
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HindIII AAGCTT 2 cut(s) 407, 869
HinfI GANTC 4 cut(s) 29, 68, 531, 672
HphI GGTGA 3 cut(s) 164, 286, 644
Hpy166II GTNNAC 2 cut(s) 265, 431
Hpy188I TCNGA 4 cut(s) 65, 77, 340, 520
Hpy188III TCNNGA 3 cut(s) 6, 760, 841
Hpy8I GTNNAC 2 cut(s) 265, 431
HpyAV CCTTC 5 cut(s) 201, 294, 307, 366, 782
HpyCH4III ACNGT 2 cut(s) 344, 838
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 2 cut(s) 227, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 517, 526
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 5 cut(s) 507, 587, 679, 811, 844
HspAI GCGC 1 cut(s) 581
KpnI GGTACC 1 cut(s) 563
Kzo9I GATC 2 cut(s) 214, 402
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 456
LpnPI CCDG 9 cut(s) 68, 153, 248, 405, 520, 611, 745, 785, 809
Lsp1109I GCAGC 2 cut(s) 304, 807
MaeI CTAG 5 cut(s) 476, 554, 605, 609, 737
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 3 cut(s) 344, 375, 719
MalI GATC 2 cut(s) 216, 404
MboI GATC 2 cut(s) 214, 402
MboII GAAGA 7 cut(s) 21, 112, 142, 158, 161, 324, 381
MfeI CAATTG 1 cut(s) 397
MhlI GDGCHC 3 cut(s) 50, 396, 453
MluCI AATT 3 cut(s) 37, 397, 778
MlyI GAGTC 2 cut(s) 23, 666
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 8 cut(s) 35, 134, 144, 154, 158, 205, 514, 622
MslI CAYNNNNRTG 1 cut(s) 839
MunI CAATTG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 2 cut(s) 214, 402
NlaIII CATG 5 cut(s) 507, 587, 679, 811, 844
NlaIV GGNNCC 4 cut(s) 452, 561, 602, 793
NsbI TGCGCA 1 cut(s) 582
NspI RCATGY 1 cut(s) 587
PagI TCATGA 1 cut(s) 840
PciSI GCTCTTC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 68, 531
PflFI GACNNNGTC 1 cut(s) 836
PkrI GCNGC 2 cut(s) 319, 822
PleI GAGTC 2 cut(s) 23, 666
PpsI GAGTC 2 cut(s) 23, 666
PpuMI RGGWCCY 1 cut(s) 791
Psp5II RGGWCCY 1 cut(s) 791
PspN4I GGNNCC 4 cut(s) 452, 561, 602, 793
PspPI GGNCC 1 cut(s) 791
PspPPI RGGWCCY 1 cut(s) 791
PsyI GACNNNGTC 1 cut(s) 836
RsaI GTAC 4 cut(s) 444, 486, 561, 812
RsaNI GTAC 4 cut(s) 443, 485, 560, 811
RseI CAYNNNNRTG 1 cut(s) 839
SapI GCTCTTC 1 cut(s) 307
SatI GCNGC 2 cut(s) 318, 821
Sau3AI GATC 2 cut(s) 214, 402
Sau96I GGNCC 1 cut(s) 791
SchI GAGTC 2 cut(s) 23, 666
SduI GDGCHC 3 cut(s) 50, 396, 453
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 839
Sse9I AATT 3 cut(s) 37, 397, 778
SspMI CTAG 5 cut(s) 476, 554, 605, 609, 737
StyI CCWWGG 2 cut(s) 454, 544
TaaI ACNGT 2 cut(s) 344, 838
TaiI ACGT 1 cut(s) 726
TaqI TCGA 2 cut(s) 27, 831
TasI AATT 3 cut(s) 37, 397, 778
TatI WGTACW 2 cut(s) 442, 810
TfiI GAWTC 2 cut(s) 68, 531
TscAI CASTG 1 cut(s) 627
TseI GCWGC 2 cut(s) 317, 820
TspDTI ATGAA 3 cut(s) 142, 276, 857
TspRI CASTG 1 cut(s) 627
Tth111I GACNNNGTC 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 791
XapI RAATTY 1 cut(s) 778
XceI RCATGY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XspI CTAG 5 cut(s) 476, 554, 605, 609, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.