Prupe.7G234300_v2.0.a1

Polyadenylate-binding protein-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
20402827 .. 20405662
2836 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G234300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 498 bp
ATGAATTCAACCATGTCATCTTTGAATCCCCATGCAGCATCATACATACCACTGAACAAGAAAGAAGAGGAGGCTAACCATGAAACTGCTCTGTTCAATTCTCCTTCTGAAGGCCACAACGGGACGGCACAGTTCTATTTCGAAGGCGGTGATGCTTCTTCTGACTTTAGCATCCATGACATTGAGGCTCTTGTCATTGACAATGGTCTGGAAAAGAGTGGTTTACAGCAGAAGATCAGCAACCAGGCTGAAGTGCAGTACATAGATGAAGATTCTGAGATACATCTGGCTTATCTGTCATTCATGTTTCCAAACATATCAGAACATTGCCTTGCTCATGTTCACTCTGCTAATGATGATGACTTGGAAGCCTCGATCAACATGCTGTATGACCTGGAGTGCTTCCCTGTTGCTGCTTCTAAATCTCTTCCAGTCAGCTCGGATACTACCGGTGATGATGATGCATCAGAACTTGAAGTTACGGAAAGAGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

166

Amino Acids

18.13

Weight (kDa)

4.22

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 129, 270
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 4 cut(s) 9, 25, 97, 476
AjnI CCWGG 2 cut(s) 243, 393
AluBI AGCT 1 cut(s) 438
AluI AGCT 1 cut(s) 438
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 35, 413
ApoI RAATTY 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 161, 464
AsuII TTCGAA 1 cut(s) 141
BbvI GCAGC 2 cut(s) 47, 400
BceAI ACGGC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 2 cut(s) 245, 395
BciVI GTATCC 1 cut(s) 436
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 2 cut(s) 36, 414
BlsI GCNGC 2 cut(s) 37, 415
Bme1390I CCNGG 2 cut(s) 245, 395
BmrFI CCNGG 2 cut(s) 245, 395
BmsI GCATC 5 cut(s) 47, 142, 180, 451, 473
BoxI GACNNNNGTC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 325
BseBI CCWGG 2 cut(s) 245, 395
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 47, 400
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 114
BshTI ACCGGT 1 cut(s) 449
BsiSI CCGG 1 cut(s) 450
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 234, 375
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 449
BssMI GATC 2 cut(s) 234, 375
Bst2UI CCWGG 2 cut(s) 245, 395
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 2 cut(s) 60, 432
BstBI TTCGAA 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 237, 378
BstMBI GATC 2 cut(s) 234, 375
BstNI CCWGG 2 cut(s) 245, 395
BstNSI RCATGY 1 cut(s) 385
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 243, 393
BstV1I GCAGC 2 cut(s) 47, 400
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 449
Csp6I GTAC 1 cut(s) 259
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 7 cut(s) 13, 32, 80, 176, 304, 338, 382
CviJI RGCY 7 cut(s) 74, 114, 188, 248, 290, 371, 438
CviKI_1 RGCY 7 cut(s) 74, 114, 188, 248, 290, 371, 438
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 236, 377
DpnII GATC 2 cut(s) 234, 375
Eam1104I CTCTTC 2 cut(s) 60, 432
EarI CTCTTC 2 cut(s) 60, 432
Eco57I CTGAAG 2 cut(s) 129, 270
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 243, 393
EcoT22I ATGCAT 1 cut(s) 466
FaeI CATG 7 cut(s) 16, 35, 83, 179, 307, 341, 385
FaqI GGGAC 1 cut(s) 136
FatI CATG 7 cut(s) 12, 31, 79, 175, 303, 337, 381
Fnu4HI GCNGC 2 cut(s) 36, 414
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 36, 414
GluI GCNGC 2 cut(s) 36, 414
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 450
Hin1II CATG 7 cut(s) 16, 35, 83, 179, 307, 341, 385
HinfI GANTC 2 cut(s) 25, 272
HpaII CCGG 1 cut(s) 450
HphI GGTGA 2 cut(s) 161, 464
Hpy166II GTNNAC 2 cut(s) 224, 343
Hpy188I TCNGA 6 cut(s) 109, 163, 277, 322, 442, 469
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 224, 343
HpyAV CCTTC 3 cut(s) 104, 114, 137
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 35, 256, 464
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 7 cut(s) 16, 35, 83, 179, 307, 341, 385
Kzo9I GATC 2 cut(s) 234, 375
LpnPI CCDG 9 cut(s) 194, 230, 257, 272, 380, 407, 420, 444, 463
Lsp1109I GCAGC 2 cut(s) 47, 400
LweI GCATC 5 cut(s) 47, 142, 180, 451, 473
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 236, 377
MboI GATC 2 cut(s) 234, 375
MboII GAAGA 5 cut(s) 77, 150, 244, 281, 419
MluCI AATT 2 cut(s) 4, 97
MnlI CCTC 4 cut(s) 61, 64, 178, 382
Mph1103I ATGCAT 1 cut(s) 466
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 2 cut(s) 245, 395
MvaI CCWGG 2 cut(s) 245, 395
NdeII GATC 2 cut(s) 234, 375
NlaIII CATG 7 cut(s) 16, 35, 83, 179, 307, 341, 385
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 141
PfeI GAWTC 2 cut(s) 25, 272
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 2 cut(s) 37, 415
PshAI GACNNNNGTC 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 243, 393
PspGI CCWGG 2 cut(s) 243, 393
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 2 cut(s) 36, 414
Sau3AI GATC 2 cut(s) 234, 375
ScrFI CCNGG 2 cut(s) 245, 395
SetI ASST 2 cut(s) 396, 440
SfaNI GCATC 5 cut(s) 47, 142, 180, 451, 473
SfuI TTCGAA 1 cut(s) 141
Sse9I AATT 2 cut(s) 4, 97
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 243, 393
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 141, 374
TasI AATT 2 cut(s) 4, 97
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 25, 272
TscAI CASTG 1 cut(s) 57
TseI GCWGC 2 cut(s) 35, 413
TspDTI ATGAA 4 cut(s) 17, 96, 282, 292
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 385
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.