Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20890702 .. 20891593

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G244600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAGGCCTAAGCTTAGTCAACGAGGTGCCGGCGTTTCGGAACCTCCAAGAATTATCATATTTTCGGCTCCTAGGCCGTTCACTGGTTCTGTTGGGGCTAGGCAGAGTTTAGTTGTTCGCTCATGGCTTGCTTTGTCCCCACAGATTGCAGTTGTGCTGTTCAGCAAAGACCCTTATATTGTTTCTTTCACTGGAGCGTTTGATTCGCGGGTTTTGGTCGAACCCAACATTGGTTTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0035250 GO:0036211 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228 Nucleotid_trans PNISR

Protein Analysis

81

Amino Acids

8.69

Weight (kDa)

11.29

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	1 cut(s)	208
AciI	CCGC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	83, 230
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 218
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AoxI	GGCC	2 cut(s)	5, 74
AspA2I	CCTAGG	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	72, 99
BlnI	CCTAGG	1 cut(s)	71
BmiI	GGNNCC	3 cut(s)	28, 42, 69
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 230
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	88, 196
BseDI	CCNNGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	83, 230
BseNI	ACTGG	2 cut(s)	88, 196
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	7, 76
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	83, 230
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	7, 76
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	7, 76
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	28, 42, 69
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	88, 196
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	31, 129
BstDEI	CTNAG	2 cut(s)	9, 14
BstFNI	CGCG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	7, 76
BtsIMutI	CAGTG	2 cut(s)	81, 189
Cac8I	GCNNGC	2 cut(s)	31, 129
Cfr10I	RCCGGY	1 cut(s)	29
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	6 cut(s)	7, 13, 68, 76, 98, 127
CviKI_1	RGCY	6 cut(s)	7, 13, 68, 76, 98, 127
DdeI	CTNAG	2 cut(s)	9, 14
Eco130I	CCWWGG	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	126
FaiI	YATR	3 cut(s)	59, 124, 177
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	1 cut(s)	122
FauI	CCCGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	72, 99
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	7, 76
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	2 cut(s)	20, 81
Hpy188I	TCNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	20, 81
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	9, 14
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	73, 194
LpnPI	CCDG	3 cut(s)	43, 69, 177
MaeI	CTAG	2 cut(s)	72, 99
MaeII	ACGT	1 cut(s)	239
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	2 cut(s)	17, 54
MroNI	GCCGGC	1 cut(s)	29
MspI	CCGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	208
NaeI	GCCGGC	1 cut(s)	31
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	126
NlaIV	GGNNCC	3 cut(s)	28, 42, 69
PceI	AGGCCT	1 cut(s)	7
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	28, 42, 69
SetI	ASST	4 cut(s)	15, 28, 46, 242
Sse9I	AATT	1 cut(s)	51
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	2 cut(s)	72, 99
StuI	AGGCCT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	71
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	2 cut(s)	88, 196
TspRI	CASTG	2 cut(s)	88, 196
XmaJI	CCTAGG	1 cut(s)	71
XspI	CTAG	2 cut(s)	72, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.