Prupe.7G245500_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
20929631 .. 20930416
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G245500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 612 bp
ATGAAGAATATGAAAATATATGATGCTGATCATGATGCCATCAAGGCTTTCAGAGGGACAGGGCTTGAATTAGTGGTGGTGGCACTTCTAAATGGATACCTGCAAGCCATGAGTGCCAATGAGGATCAAGCAATGAATTGGATTAAAGAAAATGTGCAGGCATTCCTTCCTGATACACTCATCCGTGGGATTTGTGCGGGCAATGAAGTTTTAGGTGTGGCTGAATTTGAATTGTGGGGAGCTCTTTTGGGTGCAGTTAAAAACAAATCTACAAGGCAGCTGTTTTTTTTTCGTTCCTGCACATTTAAAAAGACTGTTAAGCAGAAATACATGAAGCCATTTTTGGAGCTCTTCTCGGAAATCGGGTCTCTCTTCTGTTTAAATGCTTCCCCTTTCCTTGTCTACATGGCTGATCCAGCAAACATTGATATAAATTATGCTCCATTGGAAGATGGCAATGAAACTGCAGCCACCGTAAATAATGCAAGGATATATAATTATAATCTACCGAAGACATACGTCTTTGCCGTATTTAATGAGGACTTGAAACCTGGGCCAACTTCTGGGAGAAATTATGGACTGTTCAAGGTTGATGGGACCATTTGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17

Protein Analysis

204

Amino Acids

22.67

Weight (kDa)

5.89

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
Acc36I ACCTGC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 563
AccI GTMKAC 1 cut(s) 402
AciI CCGC 1 cut(s) 197
AclWI GGATC 2 cut(s) 132, 407
AcsI RAATTY 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 563
AgsI TTSAA 4 cut(s) 68, 230, 547, 586
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 3 cut(s) 242, 280, 349
AluI AGCT 3 cut(s) 242, 280, 349
Alw21I GWGCWC 2 cut(s) 244, 351
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 2 cut(s) 132, 407
AoxI GGCC 1 cut(s) 554
ApeKI GCWGC 2 cut(s) 277, 467
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 554, 597
AvaII GGWCC 1 cut(s) 597
BanII GRGCYC 2 cut(s) 244, 351
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 2 cut(s) 244, 351
BbvI GCAGC 2 cut(s) 289, 479
BccI CCATC 3 cut(s) 47, 446, 587
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 89
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 108
BfuI GTATCC 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 2 cut(s) 278, 468
BlsI GCNGC 2 cut(s) 279, 469
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 597
BmgT120I GGNCC 2 cut(s) 554, 597
BmiI GGNNCC 1 cut(s) 598
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 13, 25
BoxI GACNNNNGTC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 184, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse3DI GCAATG 3 cut(s) 138, 208, 463
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 184, 551
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMI GCAATG 3 cut(s) 138, 208, 463
BseXI GCAGC 2 cut(s) 289, 479
BsgI GTGCAG 3 cut(s) 176, 273, 283
BshFI GGCC 1 cut(s) 556
BsiHKAI GWGCWC 2 cut(s) 244, 351
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 556
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 244, 351
Bsp143I GATC 3 cut(s) 28, 124, 412
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 556
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 598
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 108
BspPI GGATC 2 cut(s) 132, 407
BspQI GCTCTTC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 372
BsrDI GCAATG 3 cut(s) 138, 208, 463
BssECI CCNNGG 2 cut(s) 184, 551
BssMI GATC 3 cut(s) 28, 124, 412
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 316, 475, 582
Bst6I CTCTTC 2 cut(s) 356, 377
BstC8I GCNNGC 3 cut(s) 105, 159, 199
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 3 cut(s) 31, 127, 415
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 3 cut(s) 28, 124, 412
BstMWI GCNNNNNNNGC 3 cut(s) 44, 113, 416
BstNI CCWGG 1 cut(s) 552
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 289, 479
BstV2I GAAGAC 1 cut(s) 518
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 556
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 105, 159, 199
CciI TCATGA 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 554, 597
CviAII CATG 4 cut(s) 32, 109, 331, 406
DpnI GATC 3 cut(s) 30, 126, 414
DpnII GATC 3 cut(s) 28, 124, 412
DraI TTTAAA 2 cut(s) 307, 381
Eam1104I CTCTTC 2 cut(s) 356, 377
EarI CTCTTC 2 cut(s) 356, 377
Ecl136II GAGCTC 2 cut(s) 242, 349
Eco24I GRGCYC 2 cut(s) 244, 351
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 597
Eco53kI GAGCTC 2 cut(s) 242, 349
EcoICRI GAGCTC 2 cut(s) 242, 349
EcoRII CCWGG 1 cut(s) 550
EcoT38I GRGCYC 2 cut(s) 244, 351
FaeI CATG 4 cut(s) 35, 112, 334, 409
FaqI GGGAC 1 cut(s) 70
FatI CATG 4 cut(s) 31, 108, 330, 405
FauI CCCGC 1 cut(s) 190
FauNDI CATATG 1 cut(s) 608
FbaI TGATCA 1 cut(s) 28
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 278, 468
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 2 cut(s) 244, 351
Fsp4HI GCNGC 2 cut(s) 278, 468
GluI GCNGC 2 cut(s) 278, 468
HaeIII GGCC 1 cut(s) 556
Hin1II CATG 4 cut(s) 35, 112, 334, 409
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 2 cut(s) 53, 358
Hpy188III TCNNGA 2 cut(s) 32, 170
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 3 cut(s) 316, 475, 582
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 7 cut(s) 103, 157, 254, 300, 467, 485, 606
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 113, 416
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 35, 112, 334, 409
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 3 cut(s) 28, 124, 412
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 3 cut(s) 239, 346, 445
LpnPI CCDG 9 cut(s) 45, 113, 143, 183, 310, 429, 537, 549, 564
Lsp1109I GCAGC 2 cut(s) 289, 479
LweI GCATC 2 cut(s) 13, 25
MaeII ACGT 1 cut(s) 519
MalI GATC 3 cut(s) 30, 126, 414
MboI GATC 3 cut(s) 28, 124, 412
MboII GAAGA 5 cut(s) 16, 343, 364, 461, 523
MhlI GDGCHC 2 cut(s) 244, 351
MluCI AATT 7 cut(s) 68, 136, 224, 230, 433, 496, 571
MnlI CCTC 3 cut(s) 47, 115, 532
MseI TTAA 6 cut(s) 144, 258, 306, 318, 380, 534
MspA1I CMGCKG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 552
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 44, 113, 416
NdeI CATATG 1 cut(s) 608
NdeII GATC 3 cut(s) 28, 124, 412
NlaIII CATG 4 cut(s) 35, 112, 334, 409
NlaIV GGNNCC 1 cut(s) 598
PagI TCATGA 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PctI GAATGC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 2 cut(s) 279, 469
PshAI GACNNNNGTC 1 cut(s) 518
PsiI TTATAA 1 cut(s) 501
Psp124BI GAGCTC 2 cut(s) 244, 351
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 598
PspPI GGNCC 2 cut(s) 554, 597
PstI CTGCAG 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 280
SacI GAGCTC 2 cut(s) 244, 351
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 6 cut(s) 144, 258, 306, 318, 380, 534
SatI GCNGC 2 cut(s) 278, 468
Sau3AI GATC 3 cut(s) 28, 124, 412
Sau96I GGNCC 2 cut(s) 554, 597
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 2 cut(s) 244, 351
SetI ASST 8 cut(s) 102, 217, 244, 282, 351, 522, 553, 591
SfaNI GCATC 2 cut(s) 13, 25
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 597
Sse9I AATT 7 cut(s) 68, 136, 224, 230, 433, 496, 571
SsiI CCGC 1 cut(s) 197
SstI GAGCTC 2 cut(s) 244, 351
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 3 cut(s) 316, 475, 582
TaiI ACGT 1 cut(s) 522
TasI AATT 7 cut(s) 68, 136, 224, 230, 433, 496, 571
Tru1I TTAA 6 cut(s) 144, 258, 306, 318, 380, 534
Tru9I TTAA 6 cut(s) 144, 258, 306, 318, 380, 534
TseI GCWGC 2 cut(s) 277, 467
TspDTI ATGAA 6 cut(s) 17, 26, 149, 219, 347, 474
TspGWI ACGGA 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.