Prupe.7G250600_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
21193390 .. 21193998
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G250600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 609 bp
ATGGCTGAGAAGAACAATCAGGCCTCTCCATCAGCAGCAGCTACTAATGGACAGCACCCCACAGTTGATGAAGAATCTGCCATTTTGCCATCCCAGGAGCTCAAACGCAAGAAGAGAATCAAATTGGCAATCTATATTTCTGCTTTTGTTGTGGTTCAGATCATAGTTATCACCACATTTGCACTCACTGTGATGCGTGTGCAGTCCCCCAAGCTCAGATTGGGCGCCATCAGCGTCCAAACTCTCAACGCTTCCTCTTCAACACCTTCATTTGACATGACCTTCACAACCCAAGTCAGGATAAAGAACACAAATTTTGGTCGCTATAAGTTTGATGCTACCAATGTTAGGTTCATGTACGAAGACAGGGCTGTTGGGCAAGTTAGAATTCCCAAGAGCAAGGCTGGGATGCGTTCGACCAAGAAGATTGATGTGACAGTGAGTTTGAATTCCAAAGAGTTGCCAAGCAGAAGCAGGTACAATCTTGGCAATGAACTCAAAACTGGGGTTTTGAGTCTGAGTAGCGAAGCACGGTTGGCCGGAAAGGTTGAATTGATGTTTGTGATGAAGAAAAAAGTCTGCCAAAATGGGATGCACTTTGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

203

Amino Acids

22.38

Weight (kDa)

10.31

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 3 cut(s) 313, 387, 448
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 359, 479
AfiI CCNNNNNNNGG 2 cut(s) 297, 348
AgsI TTSAA 3 cut(s) 261, 448, 551
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 3 cut(s) 41, 100, 214
AluI AGCT 3 cut(s) 41, 100, 214
Alw21I GWGCWC 1 cut(s) 102
AoxI GGCC 2 cut(s) 21, 537
ApeKI GCWGC 2 cut(s) 35, 38
ApoI RAATTY 3 cut(s) 313, 387, 448
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 163
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 47, 50
BccI CCATC 3 cut(s) 37, 97, 236
BciT130I CCWGG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 465
BisI GCNGC 2 cut(s) 36, 39
BlsI GCNGC 2 cut(s) 37, 40
Bme1390I CCNGG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 4 cut(s) 183, 325, 399, 582
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 348
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 496
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 3 cut(s) 89, 414, 597
BseLI CCNNNNNNNGG 2 cut(s) 297, 348
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 229, 509
BseNI ACTGG 1 cut(s) 508
BseXI GCAGC 2 cut(s) 47, 50
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 221
BshFI GGCC 2 cut(s) 23, 539
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 297, 348
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 2 cut(s) 23, 539
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 159
BspANI GGCC 2 cut(s) 23, 539
BspCNI CTCAG 2 cut(s) 228, 510
BspLI GGNNCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 159
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 4 cut(s) 64, 190, 439, 534
Bst6I CTCTTC 2 cut(s) 107, 262
BstACI GRCGYC 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 6, 215, 518
BstF5I GGATG 3 cut(s) 89, 414, 597
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 231, 536
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 47, 50
BstV2I GAAGAC 1 cut(s) 369
BsuRI GGCC 2 cut(s) 23, 539
BtsCI GGATG 3 cut(s) 89, 414, 597
BtsIMutI CAGTG 2 cut(s) 186, 444
BveI ACCTGC 1 cut(s) 465
CfoI GCGC 1 cut(s) 227
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 358, 478
CviAII CATG 2 cut(s) 277, 355
CviJI RGCY 8 cut(s) 5, 23, 41, 100, 214, 371, 404, 539
CviKI_1 RGCY 8 cut(s) 5, 23, 41, 100, 214, 371, 404, 539
CviQI GTAC 2 cut(s) 358, 478
DdeI CTNAG 3 cut(s) 6, 215, 518
DinI GGCGCC 1 cut(s) 226
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 107, 262
EarI CTCTTC 2 cut(s) 107, 262
Ecl136II GAGCTC 1 cut(s) 100
Eco147I AGGCCT 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 2 cut(s) 387, 448
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
FaeI CATG 2 cut(s) 280, 358
FaiI YATR 5 cut(s) 135, 164, 278, 327, 356
FaqI GGGAC 1 cut(s) 190
FatI CATG 2 cut(s) 276, 354
Fnu4HI GCNGC 2 cut(s) 36, 39
FokI GGATG 3 cut(s) 76, 421, 604
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 36, 39
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 36, 39
GsaI CCCAGC 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 23, 539
HapII CCGG 1 cut(s) 540
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 280, 358
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 3 cut(s) 74, 117, 514
HpaII CCGG 1 cut(s) 540
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 159, 218, 519
Hpy188III TCNNGA 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 276, 292
HpyCH4III ACNGT 4 cut(s) 64, 190, 439, 534
HpyCH4V TGCA 3 cut(s) 182, 202, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 536
HpyF3I CTNAG 3 cut(s) 6, 215, 518
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 280, 358
HspAI GCGC 1 cut(s) 225
KasI GGCGCC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 9 cut(s) 5, 80, 107, 283, 352, 390, 460, 489, 553
Lsp1109I GCAGC 2 cut(s) 47, 50
LweI GCATC 4 cut(s) 183, 325, 399, 582
MaeIII GTNAC 1 cut(s) 433
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 7 cut(s) 22, 83, 124, 249, 374, 436, 580
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 5 cut(s) 122, 313, 387, 448, 551
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 523
MnlI CCTC 2 cut(s) 34, 265
MseI TTAA 1 cut(s) 607
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 231, 536
NarI GGCGCC 1 cut(s) 225
NdeII GATC 1 cut(s) 159
NlaIII CATG 2 cut(s) 280, 358
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 433
PceI AGGCCT 1 cut(s) 23
PfeI GAWTC 2 cut(s) 74, 117
PkrI GCNGC 2 cut(s) 37, 40
PleI GAGTC 1 cut(s) 522
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 226
RsaI GTAC 2 cut(s) 359, 479
RsaNI GTAC 2 cut(s) 358, 478
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 607
SatI GCNGC 2 cut(s) 36, 39
Sau3AI GATC 1 cut(s) 159
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 102
SetI ASST 8 cut(s) 43, 102, 216, 268, 284, 353, 479, 549
SfaNI GCATC 4 cut(s) 183, 325, 399, 582
SfoI GGCGCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 5 cut(s) 122, 313, 387, 448, 551
SseBI AGGCCT 1 cut(s) 23
SspDI GGCGCC 1 cut(s) 224
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 4 cut(s) 64, 190, 439, 534
TaqI TCGA 1 cut(s) 416
TasI AATT 5 cut(s) 122, 313, 387, 448, 551
TfiI GAWTC 2 cut(s) 74, 117
Tru1I TTAA 1 cut(s) 607
Tru9I TTAA 1 cut(s) 607
TscAI CASTG 2 cut(s) 193, 444
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 35, 38
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 5 cut(s) 84, 258, 343, 507, 581
TspRI CASTG 2 cut(s) 193, 444
XapI RAATTY 3 cut(s) 313, 387, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.