Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0021241

Physical Location & Seq

Genomic Coordinates Reverse (-)

21250471 .. 21253552

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G251300.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTTAGACAACAGAGAACTGCATTTCCTCCAAATTTTGTACACTCACTTGACGGGTTCACACATGATGATGATGATAGCTCTTGCCTGCAGGGACGCTGGCCTACGTTTTGCAGGGGTGCATGATTCCTTCTGGACTCATGCATGTGATGTGGACCAAATGAACGAGATACTTAGGCAAAAATTTGGCCAATACTTGAAAATCTATGCCTCTTCCCCGTTGCTTGAAAGTTTCCAAGCATCATATCCAGCGTTGACTTTTCCTCCACTCCCAGAAAGAGGCGACTTTGACTTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

100

Amino Acids

11.42

Weight (kDa)

5.59

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021241)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G251300_v2.0.a1 Prupe.7G251300_v2.0.a1 Prupe.7G251300_v2.0.a1 Prupe.7G251300_v2.0.a1 Prupe.7G251300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	33, 182
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	199, 227
AloI	GAACNNNNNNTCC	2 cut(s)	9, 41
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
AoxI	GGCC	2 cut(s)	100, 187
ApoI	RAATTY	2 cut(s)	33, 182
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	102, 189
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	102, 189
Bsp1407I	TGTACA	1 cut(s)	39
BspANI	GGCC	2 cut(s)	102, 189
BspMAI	CTGCAG	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	217
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	88, 100
BstDEI	CTNAG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	102, 189
Cac8I	GCNNGC	2 cut(s)	88, 100
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	4 cut(s)	64, 122, 140, 144
CviJI	RGCY	3 cut(s)	80, 102, 189
CviKI_1	RGCY	3 cut(s)	80, 102, 189
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	145
FaeI	CATG	4 cut(s)	67, 125, 143, 147
FaiI	YATR	6 cut(s)	65, 123, 141, 145, 207, 244
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	4 cut(s)	63, 121, 139, 143
HaeIII	GGCC	2 cut(s)	102, 189
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	67, 125, 143, 147
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	125, 136
Hpy166II	GTNNAC	4 cut(s)	42, 59, 154, 255
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	4 cut(s)	42, 59, 154, 255
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	6 cut(s)	22, 90, 113, 121, 143, 295
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	4 cut(s)	67, 125, 143, 147
LpnPI	CCDG	7 cut(s)	76, 84, 99, 100, 118, 261, 285
LweI	GCATC	1 cut(s)	248
MaeII	ACGT	1 cut(s)	106
MboII	GAAGA	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	2 cut(s)	33, 182
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	4 cut(s)	38, 220, 272, 273
Mox20I	TGGCCA	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	68, 144
Msp20I	TGGCCA	1 cut(s)	189
NlaIII	CATG	4 cut(s)	67, 125, 143, 147
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	68, 144
Sau96I	GGNCC	1 cut(s)	154
SbfI	CCTGCAGG	1 cut(s)	92
SchI	GAGTC	1 cut(s)	130
SdaI	CCTGCAGG	1 cut(s)	92
SetI	ASST	2 cut(s)	82, 109
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	68, 144
Sse8387I	CCTGCAGG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	33, 182
TaiI	ACGT	1 cut(s)	109
TasI	AATT	2 cut(s)	33, 182
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	2 cut(s)	33, 182
XceI	RCATGY	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.