Prupe.8G074800_v2.0.a1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
N/A
Physical Location & Seq
Reverse (-)
10907812 .. 10909438
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G074800.1

Sequence Viewer

Length: 816 bp
ATGAGCAGTATATCTGTGAGTGTGAATGGAAAATGCCAAGTTCCCCCTGGTTTCAGATTTCAACCAACGGAAGAAGAGCTCTTGCTATATTACCTGAGGAAGAGGGTTTCATGTGAGAAGATCGATCTGGACGTAATTCGTGATATTGATCTCACTAAGCTTGAGCCATGGGACATTCAAGAAAAATGCAAAATAGGAAGCTTACCTCAAAATGACTGGTACTTGTTTAGCCACAAGGACAAGAAGTATCCAAGTGGGACGCGAACAAATCGGGCAACCATTGCTGGGTTTTGGAAGGCCACAGGGCGTGATAAGGTGATATACAGCAACAGTAAGCCAATTGGGTTGAGGAAAACTCTCGTGTTCTACAATGGCAGAGCTCCACATGGAGAAAGATCTGATTGGCTCATGTACGAATATAACCATATTGTCTCCAATGCTATGGGAGGGGCAGCAACAGAGGAAGAGGGATGGGTGGTGTGTCACATATTCATCAGGAAAAAGAAGAACTTGAAAACCTTAAACAGCCCTAGCAATTCGTCCTTCAACTACATGGGAATTAATACAGGTCGTATGTTGGAATCATACTATGATGAAGGATCTTTGGAGCAAATGTTTCAGCAAATGGAAAGGAATTGTAAAGAAGAGAATAAGGCAGAGGTGGTCAAATACAATACTAAACCCTTAATATACACCAGCAACCAGGTGATTGGCGGCCCTGATCCCAAGTCCTTGCATCAAATTGTCTCAGGACTCACCAGTTGGGCAGCCTTTGATCGCCTAATTGCTTCCCAGCTCAATGGCCACACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

272

Amino Acids

30.98

Weight (kDa)

8.93

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 262
AciI CCGC 1 cut(s) 714
AclWI GGATC 2 cut(s) 607, 716
AcoI YGGCCR 1 cut(s) 802
AfaI GTAC 2 cut(s) 221, 413
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 4 cut(s) 62, 179, 514, 547
AjnI CCWGG 2 cut(s) 46, 702
AluBI AGCT 6 cut(s) 79, 160, 201, 380, 796, 812
AluI AGCT 6 cut(s) 79, 160, 201, 380, 796, 812
Alw21I GWGCWC 2 cut(s) 81, 382
Alw26I GTCTC 2 cut(s) 436, 751
AlwI GGATC 2 cut(s) 607, 716
AoxI GGCC 3 cut(s) 297, 715, 802
ApeKI GCWGC 2 cut(s) 452, 767
AseI ATTAAT 1 cut(s) 561
AspS9I GGNCC 1 cut(s) 716
AsuHPI GGTGA 3 cut(s) 328, 718, 748
AxyI CCTNAGG 1 cut(s) 95
BalI TGGCCA 1 cut(s) 804
BanII GRGCYC 2 cut(s) 81, 382
BauI CACGAG 1 cut(s) 359
Bbv12I GWGCWC 2 cut(s) 81, 382
BbvI GCAGC 2 cut(s) 464, 779
BccI CCATC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 48, 704
BciVI GTATCC 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 436, 751
BfaI CTAG 1 cut(s) 531
BfuI GTATCC 1 cut(s) 258
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 453, 715, 768
BlsI GCNGC 3 cut(s) 454, 716, 769
Bme1390I CCNGG 2 cut(s) 48, 704
BmgT120I GGNCC 1 cut(s) 716
BmrFI CCNGG 2 cut(s) 48, 704
BmsI GCATC 1 cut(s) 745
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpuEI CTTGAG 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 46, 167
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 221, 759
Bse21I CCTNAGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 2 cut(s) 48, 704
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 46, 167
BseGI GGATG 1 cut(s) 476
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 86, 762
BseNI ACTGG 2 cut(s) 221, 759
BseXI GCAGC 2 cut(s) 464, 779
BseYI CCCAGC 2 cut(s) 284, 792
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 3 cut(s) 299, 717, 804
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 81, 382
BslFI GGGAC 2 cut(s) 185, 271
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 436, 751
BsmFI GGGAC 2 cut(s) 185, 271
BsnI GGCC 3 cut(s) 299, 717, 804
Bsp1286I GDGCHC 2 cut(s) 81, 382
Bsp143I GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 1 cut(s) 714
BspANI GGCC 3 cut(s) 299, 717, 804
BspCNI CTCAG 2 cut(s) 87, 761
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 1 cut(s) 262
BspPI GGATC 2 cut(s) 607, 716
BspQI GCTCTTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 2 cut(s) 221, 759
BssECI CCNNGG 2 cut(s) 46, 167
BssMI GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
BssSI CACGAG 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 48, 704
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 4 cut(s) 69, 95, 459, 639
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDEI CTNAG 4 cut(s) 95, 156, 748, 813
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 476
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 7 cut(s) 123, 127, 151, 398, 602, 724, 778
BstMAI GTCTC 2 cut(s) 436, 751
BstMBI GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 2 cut(s) 48, 704
BstSCI CCNGG 2 cut(s) 46, 702
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 464, 779
BstX2I RGATCY 2 cut(s) 395, 599
BstXI CCANNNNNNTGG 3 cut(s) 442, 710, 800
BstYI RGATCY 2 cut(s) 395, 599
Bsu15I ATCGAT 1 cut(s) 123
Bsu36I CCTNAGG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 3 cut(s) 299, 717, 804
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 716
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 268
CsiI ACCWGGT 1 cut(s) 702
Csp6I GTAC 2 cut(s) 220, 412
CviAII CATG 5 cut(s) 111, 168, 386, 409, 553
CviQI GTAC 2 cut(s) 220, 412
DdeI CTNAG 4 cut(s) 95, 156, 748, 813
DpnI GATC 7 cut(s) 122, 126, 150, 397, 601, 723, 777
DpnII GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 4 cut(s) 69, 95, 459, 639
EarI CTCTTC 4 cut(s) 69, 95, 459, 639
Ecl136II GAGCTC 2 cut(s) 79, 380
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 81, 382
Eco53kI GAGCTC 2 cut(s) 79, 380
Eco81I CCTNAGG 1 cut(s) 95
EcoICRI GAGCTC 2 cut(s) 79, 380
EcoRII CCWGG 2 cut(s) 46, 702
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 81, 382
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 5 cut(s) 114, 171, 389, 412, 556
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 2 cut(s) 185, 271
FatI CATG 5 cut(s) 110, 167, 385, 408, 552
Fnu4HI GCNGC 3 cut(s) 453, 715, 768
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 2 cut(s) 81, 382
Fsp4HI GCNGC 3 cut(s) 453, 715, 768
FspBI CTAG 1 cut(s) 531
GluI GCNGC 3 cut(s) 453, 715, 768
GsaI CCCAGC 2 cut(s) 288, 796
HaeIII GGCC 3 cut(s) 299, 717, 804
HgaI GACGC 1 cut(s) 268
Hin1II CATG 5 cut(s) 114, 171, 389, 412, 556
HindIII AAGCTT 2 cut(s) 158, 199
HinfI GANTC 2 cut(s) 581, 753
HphI GGTGA 3 cut(s) 328, 718, 748
Hpy188I TCNGA 2 cut(s) 56, 400
Hpy188III TCNNGA 5 cut(s) 128, 140, 179, 496, 750
HpyAV CCTTC 3 cut(s) 289, 553, 590
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 189, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 4 cut(s) 95, 156, 748, 813
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 5 cut(s) 114, 171, 389, 412, 556
Kzo9I GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 385, 607
Lsp1109I GCAGC 2 cut(s) 464, 779
LweI GCATC 1 cut(s) 745
MabI ACCWGGT 1 cut(s) 702
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 482
MalI GATC 7 cut(s) 122, 126, 150, 397, 601, 723, 777
MboI GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
MboII GAAGA 7 cut(s) 83, 86, 112, 130, 476, 517, 656
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 395, 599
MhlI GDGCHC 2 cut(s) 81, 382
MlsI TGGCCA 1 cut(s) 804
MluCI AATT 7 cut(s) 135, 339, 535, 558, 634, 741, 783
MluNI TGGCCA 1 cut(s) 804
MlyI GAGTC 1 cut(s) 747
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 8 cut(s) 90, 96, 216, 342, 440, 454, 460, 652
Mox20I TGGCCA 1 cut(s) 804
MscI TGGCCA 1 cut(s) 804
MseI TTAA 3 cut(s) 521, 561, 686
Msp20I TGGCCA 1 cut(s) 804
MspR9I CCNGG 2 cut(s) 48, 704
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 2 cut(s) 48, 704
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 167
NdeII GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
NlaIII CATG 5 cut(s) 114, 171, 389, 412, 556
NmuCI GTSAC 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 3 cut(s) 454, 716, 769
PleI GAGTC 1 cut(s) 747
PpsI GAGTC 1 cut(s) 747
PshBI ATTAAT 1 cut(s) 561
Psp124BI GAGCTC 2 cut(s) 81, 382
Psp6I CCWGG 2 cut(s) 46, 702
PspFI CCCAGC 2 cut(s) 284, 792
PspGI CCWGG 2 cut(s) 46, 702
PspPI GGNCC 1 cut(s) 716
PsuI RGATCY 2 cut(s) 395, 599
RsaI GTAC 2 cut(s) 221, 413
RsaNI GTAC 2 cut(s) 220, 412
SacI GAGCTC 2 cut(s) 81, 382
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 521, 561, 686
SatI GCNGC 3 cut(s) 453, 715, 768
Sau3AI GATC 7 cut(s) 120, 124, 148, 395, 599, 721, 775
Sau96I GGNCC 1 cut(s) 716
SchI GAGTC 1 cut(s) 747
ScrFI CCNGG 2 cut(s) 48, 704
SduI GDGCHC 2 cut(s) 81, 382
SexAI ACCWGGT 1 cut(s) 702
SfaNI GCATC 1 cut(s) 745
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 7 cut(s) 135, 339, 535, 558, 634, 741, 783
SsiI CCGC 1 cut(s) 714
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 2 cut(s) 81, 382
StyD4I CCNGG 2 cut(s) 46, 702
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 123
TasI AATT 7 cut(s) 135, 339, 535, 558, 634, 741, 783
TauI GCSGC 1 cut(s) 717
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 3 cut(s) 521, 561, 686
Tru9I TTAA 3 cut(s) 521, 561, 686
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 2 cut(s) 452, 767
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 3 cut(s) 99, 481, 609
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.