Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18071139 .. 18073620

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCCTCCATTTCCTTTGCAGGTTTGTTCCATCTGCTTCAATTCGTTATTTTCCTTTCGATTTTTGCTTAATTTACTTGAATTTCTACTTGATTTCTCTTTCGCATGCACCAATCCCGACGGATTGCCGATTTCCACCGACGATATATTCCAAAATGGCCAGATCCGTCCTGTGTTCCTGATTTTCAACCCGGATCTCTTGTTCGCAAATGCCGACGACGATGATTTTTCTATAGCCAAAGAGGCTACCGCTTTGGATGATCTAATTGATGATGATATTCAAATGGCTATTCAAATGCTTCTGGTCCCATTTGAATTTTTAGTTAGGAGACAAACTGCTCGTCTGTTAGACCCAAGCCTTCAGTGTCTTCGATTTGTTTATGATGAACTAATGAAGATAAGCCACGCTTGTGAGGTAACTGAGTTGCAAAGGTTTCCAGTATTGAGAAAGCATCTGGATGAAGTCATGGTAAAATTTTTGCGCCATGGTGTAGAACCTGCAAAGAGAATGATAGGAAATCTTATTGAGATGGAGGTATTTCCGTTTGCCTTTGCGATTGTATCTGGTGAAACTATGGACAATTGGAGGTGGCAGCAAAGGATATCGAATCTCTTGTTAGGGTTTTTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

211

Amino Acids

24.34

Weight (kDa)

4.56

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	10, 505
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	157, 201
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	80, 314, 473
AcuI	CTGAAG	1 cut(s)	344
AgsI	TTSAA	6 cut(s)	40, 80, 187, 281, 293, 314
AleI	CACNNNNGTG	1 cut(s)	408
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	157, 201
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	592
ApoI	RAATTY	3 cut(s)	80, 314, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	2 cut(s)	38, 523
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	322
BfmI	CTRYAG	1 cut(s)	231
BfuAI	ACCTGC	2 cut(s)	10, 505
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	593
BlsI	GCNGC	1 cut(s)	594
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	262, 463
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	604
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	162, 193, 259
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	2 cut(s)	10, 505
BspPI	GGATC	2 cut(s)	157, 201
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	162, 193, 259
BssT1I	CCWWGG	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	262, 463
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	3 cut(s)	165, 196, 262
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	162, 193, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	2 cut(s)	162, 193
BstYI	RGATCY	2 cut(s)	162, 193
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	262, 463
BtsIMutI	CAGTG	1 cut(s)	368
BveI	ACCTGC	2 cut(s)	10, 505
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	304
CviAII	CATG	3 cut(s)	105, 466, 485
CviJI	RGCY	6 cut(s)	159, 236, 245, 287, 357, 402
CviKI_1	RGCY	6 cut(s)	159, 236, 245, 287, 357, 402
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	3 cut(s)	164, 195, 261
DpnII	GATC	3 cut(s)	162, 193, 259
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	3 cut(s)	108, 469, 488
FaiI	YATR	8 cut(s)	106, 146, 233, 381, 467, 486, 575, 631
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	3 cut(s)	104, 465, 484
Fnu4HI	GCNGC	1 cut(s)	593
FokI	GGATG	2 cut(s)	269, 470
Fsp4HI	GCNGC	1 cut(s)	593
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	1 cut(s)	593
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	108, 469, 488
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	607
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	578
Hpy188III	TCNNGA	3 cut(s)	116, 178, 455
Hpy99I	CGWCG	4 cut(s)	122, 143, 218, 221
HpyAV	CCTTC	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	19, 108, 427, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	108, 469, 488
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	162, 193, 259
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	164, 195, 261
MboI	GATC	3 cut(s)	162, 193, 259
MboII	GAAGA	2 cut(s)	359, 406
MfeI	CAATTG	1 cut(s)	580
MflI	RGATCY	2 cut(s)	162, 193
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	7 cut(s)	40, 70, 80, 264, 314, 473, 580
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	5 cut(s)	15, 235, 406, 526, 579
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	2 cut(s)	408, 456
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	580
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	3 cut(s)	162, 193, 259
NlaIII	CATG	3 cut(s)	108, 469, 488
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	108
OliI	CACNNNNGTG	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	607
PkrI	GCNGC	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	162, 193
RseI	CAYNNNNRTG	2 cut(s)	408, 456
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	593
Sau3AI	GATC	3 cut(s)	162, 193, 259
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	6 cut(s)	24, 417, 434, 499, 537, 590
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	408, 456
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	7 cut(s)	40, 70, 80, 264, 314, 473, 580
SsiI	CCGC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	484
TaqI	TCGA	3 cut(s)	58, 370, 605
TasI	AATT	7 cut(s)	40, 70, 80, 264, 314, 473, 580
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	368
TseI	GCWGC	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	399, 407, 474
TspGWI	ACGGA	3 cut(s)	135, 155, 531
TspRI	CASTG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	3 cut(s)	80, 314, 473
XceI	RCATGY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.