Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20305043 .. 20305336

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G226400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGACTGAAAGAGACGCTTTTGCGTGGCCTACTTTGGTTTCATCTCACGCTCGAGTGGGGGATACGAGTTCCGCGAGGAACATAGCTACTTGGAATACTATGATCGACGGCTACGCTAGACTTAGCAATGTGGAGTCTGCAGAGTTGTTGTTTAATCACACGCCAACTGAGGACATAATCTCATGGACAACAATGATTGATTGTTATTCTCAGAACAAGAAATCTGGGGAAGCAATAGCAGTTTTTAATGACATGAGGATGAATGGGGAACTTGTGTTGGAATTCAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 bHLH-MYC_N

Protein Analysis

98

Amino Acids

10.89

Weight (kDa)

4.63

Isoelectric Point (pI)

23.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	281
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	6
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	124
BciVI	GTATCC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	159, 224
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	6
BsmBI	CGTCTC	1 cut(s)	6
BsnI	GGCC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	160, 223
BspFNI	CGCG	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	133
BssMI	GATC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	122, 168, 210
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	264
CseI	GACGC	1 cut(s)	23
CviAII	CATG	2 cut(s)	183, 253
CviJI	RGCY	3 cut(s)	28, 86, 111
CviKI_1	RGCY	3 cut(s)	28, 86, 111
DdeI	CTNAG	3 cut(s)	122, 168, 210
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	2 cut(s)	186, 256
FaiI	YATR	5 cut(s)	83, 101, 176, 184, 254
FalI	AAGNNNNNCTT	1 cut(s)	33
FatI	CATG	2 cut(s)	182, 252
FokI	GGATG	1 cut(s)	271
FspBI	CTAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	28
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	186, 256
HinfI	GANTC	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	3 cut(s)	122, 168, 210
Hsp92II	CATG	2 cut(s)	186, 256
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	1 cut(s)	210
MaeI	CTAG	1 cut(s)	117
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MfeI	CAATTG	1 cut(s)	289
MluCI	AATT	2 cut(s)	281, 289
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	3 cut(s)	69, 163, 249
MseI	TTAA	2 cut(s)	153, 246
MslI	CAYNNNNRTG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	74
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	2 cut(s)	186, 256
PaeR7I	CTCGAG	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspXI	VCTCGAGB	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	153, 246
Sau3AI	GATC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	143
SetI	ASST	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	2 cut(s)	281, 289
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	117
TaqI	TCGA	2 cut(s)	52, 105
TasI	AATT	2 cut(s)	281, 289
Tru1I	TTAA	2 cut(s)	153, 246
Tru9I	TTAA	2 cut(s)	153, 246
TspDTI	ATGAA	2 cut(s)	30, 275
XapI	RAATTY	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	51
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.