Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22369774 .. 22370364

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAGATGGTAAATGGAACTGCGCCTGCTAATCATGATATTGGTCAAAGTCAGACTAGTCTGAACCAGGATGTGACAGAAAGTAACGCTACAACATTCTATCCCACAACACACGAGAGTATACCTTGTGGAGAAAATTATAATTTCTACATAAATGAATCTTGTTTTGGCATCCCTACAGTAGAGGAACAGCATTATAATAAGGACATGGGGAGTATTGTTGATGAGCATTCCAATTGGGACAAGTTGTTAGTTGATGATTCTCAAAGGTTCAAGGCCGGAAGCTGTTCGTATGATCAACCAAGTTTTGAGGCTATAATTTATGCGCAAAACCATGTTGCTATCGATGATTACATGCCAAGACCGTTCATAGAGGAAGGAACTGGGCTGCCTGCGCGATATCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

137

Amino Acids

15.39

Weight (kDa)

4.43

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	141, 198
Acc16I	TGCGCA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	121
AccII	CGCG	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	274
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	66
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	286
AspLEI	GCGC	3 cut(s)	25, 328, 397
BauI	CACGAG	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	345
BseGI	GGATG	2 cut(s)	76, 171
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	278
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	388
BssMI	GATC	1 cut(s)	295
BssNAI	GTATAC	1 cut(s)	122
BssSI	CACGAG	1 cut(s)	113
Bst1107I	GTATAC	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	181, 366
BstC8I	GCNNGC	2 cut(s)	27, 393
BstF5I	GGATG	2 cut(s)	76, 171
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	3 cut(s)	25, 328, 397
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	375
BstZ17I	GTATAC	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	76, 171
Cac8I	GCNNGC	2 cut(s)	27, 393
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	3 cut(s)	25, 328, 397
ClaI	ATCGAT	1 cut(s)	345
CviAII	CATG	4 cut(s)	35, 208, 335, 355
CviJI	RGCY	4 cut(s)	278, 285, 314, 388
CviKI_1	RGCY	4 cut(s)	278, 285, 314, 388
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	401
FaeI	CATG	4 cut(s)	38, 211, 338, 358
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	34, 207, 334, 354
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	2 cut(s)	83, 158
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	1 cut(s)	57
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	3 cut(s)	24, 327, 396
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	3 cut(s)	25, 328, 397
Hin1II	CATG	4 cut(s)	38, 211, 338, 358
Hin6I	GCGC	3 cut(s)	23, 326, 395
HinP1I	GCGC	3 cut(s)	23, 326, 395
HinfI	GANTC	2 cut(s)	158, 260
HpaII	CCGG	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	2 cut(s)	54, 63
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	181, 366
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
Hsp92II	CATG	4 cut(s)	38, 211, 338, 358
HspAI	GCGC	3 cut(s)	23, 326, 395
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	39, 53, 80, 292, 369, 405
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	73, 83
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MfeI	CAATTG	1 cut(s)	235
MluCI	AATT	4 cut(s)	136, 142, 235, 318
MnlI	CCTC	3 cut(s)	178, 304, 367
MroXI	GAANNNNTTC	1 cut(s)	286
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	38, 211, 338, 358
NmuCI	GTSAC	1 cut(s)	73
NsbI	TGCGCA	1 cut(s)	327
NspI	RCATGY	1 cut(s)	358
PagI	TCATGA	1 cut(s)	34
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	158, 260
PkrI	GCNGC	1 cut(s)	390
PsiI	TTATAA	2 cut(s)	141, 198
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	3 cut(s)	127, 272, 287
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	4 cut(s)	136, 142, 235, 318
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	181, 366
TaqI	TCGA	1 cut(s)	345
TasI	AATT	4 cut(s)	136, 142, 235, 318
TfiI	GAWTC	2 cut(s)	158, 260
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	171, 358
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.