Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22421282 .. 22424878

Gene Structure 3597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G270000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGGGAGGGCTTCATGCTGTAACAAGATTGGGCTGAAGAAGGGGAGGTGGACAGCAGAGGAGGATCAAATCTTAATCAACTATATCCAGACCAATGGGGAAGGCTCCTGGAGGTCATTACCCAAGAATGCAGGGTTACTGCGGTGTGGTAAAAGTTGCAGACTAAGATGGATTAATTATTTGAGAGCCGACTTGAAGAGGGGAAATATATCTGCCCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTCTGGGAAATAGGTGGTCTTTGATAGCAAGTCAATTACCAGGAAGAACGGATAATGAAATCAAGAACTACTGGAACTCTCATTTGAGTAGGAAAATTGACACCTTCAGAAGGCCTACTACTACTACTAGTGATCAAATGAGTAGCCTACCAGCAGCTGCTAGTAATAATATTCCTTCCAAGCGAAGAGGCGGTAGAACCAGTCGCTGGGCCATGAAGAAGAGCAAAACATACACCACTACTCATTCTACTAATTATACCCAACGTCACAACAAGCGACAGAAGGACATTACAAATATTGCTGCTGATGATGATGAGGCGATTGCCCTGGAGACGAAGACGCCCTTGCCTGGGCCTAATGATAATATTGATACTATGCACCACGATTACATGGTATTAATGACTGACCCAGTTGCTGATGATCATGATCATCATCCTCATCACATGGACGACTGCAGGGTCGACAACCTTGTTAATCATGATCATGATCATCAGCGGCAGGAGGAAGCAGGAGGACTAGCAATGCCAGCGGTCCTCATGAGCTCAACTACTACTATTACTGAGGAGGAGGAGGAGGAGGTGGAGGTGGAGAAGAAGGAGACTCGTGATCATGATGGGCTATGCCCTGTCAATATTGATCAGTGTCAGAAGGAAAGTCACGAAATGCTTTTAGGACCACATCCACATAACGACGAGAACAAGGACGATGACTTGGATGAATCTGGCGGCATTGAATTTGATGGTGGGTTGTTGGGTACATTTAATGAATTGATTGACAATGTTGAGTTACTGCAGAAGGATCCAAATTCAAATGGGGTTTTGACTTTAAGTGACCATCAACATGATCATGCCATGGGCGTTACTCATGAGGTAGATCAGGTAGAGACTACTACTACTTGTGGTCATTTGAGCTCGTCATCAAACGAACAAGTATGCTTTTCTTCAATAATGTCAATGACTGCTACTTCAAGTAGTTCAGCTTCAGCTTCAGCAGCTGCTGGTAGTTATTATTTTGATATGGAGGATGGTCAAGCTGCTGCTGCTGCAAATGGAAATGATCGTGATCATAACAATCATATATTATGGGATTGGGAGAGTGTTGTCGAAGCAGGGCATGAGTTATGGGATCATGATGATGATAAAGAAAATATGCTTTCTTGGTTGTGGGAGGAGGGTACTTGTTCTTCTTCTACTACTAGTAATACTACTGCTGCTGCTGCTGCTGCTTCTACCATTGATCGTCATCTTAACTGGGAAGGAGACACTACCACTGATGATACATCGATGATGAGAAAGGCCGTGGACCCTGACAAACAAAATGCGATGGTGGCTTGGCTTCTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

532

Amino Acids

59.2

Weight (kDa)

4.99

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	5 cut(s)	142, 441, 745, 779, 975
AclWI	GGATC	4 cut(s)	72, 1043, 1056, 1383
AcsI	RAATTY	2 cut(s)	983, 1054
AcuI	CTGAAG	4 cut(s)	56, 340, 1215, 1221
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	2 cut(s)	1006, 1426
AfiI	CCNNNNNNNGG	4 cut(s)	360, 456, 599, 600
AgsI	TTSAA	5 cut(s)	196, 983, 1059, 1194, 1218
AhlI	ACTAGT	2 cut(s)	377, 1445
AjnI	CCWGG	4 cut(s)	107, 289, 576, 598
AluBI	AGCT	7 cut(s)	407, 792, 1161, 1229, 1235, 1244, 1283
AluI	AGCT	7 cut(s)	407, 792, 1161, 1229, 1235, 1244, 1283
Alw21I	GWGCWC	2 cut(s)	794, 1163
Alw26I	GTCTC	4 cut(s)	575, 842, 1127, 1503
AlwI	GGATC	4 cut(s)	72, 1043, 1056, 1383
AlwNI	CAGNNNCTG	5 cut(s)	407, 456, 665, 1244, 1247
AoxI	GGCC	4 cut(s)	362, 459, 602, 1545
ApoI	RAATTY	2 cut(s)	983, 1054
AseI	ATTAAT	2 cut(s)	174, 647
AspS9I	GGNCC	5 cut(s)	459, 602, 781, 923, 1552
AvaII	GGWCC	3 cut(s)	781, 923, 1552
BamHI	GGATCC	1 cut(s)	1048
BanII	GRGCYC	2 cut(s)	794, 1163
BarI	GAAGNNNNNNTAC	6 cut(s)	352, 384, 1213, 1245, 1417, 1449
BauI	CACGAG	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	794, 1163
BccI	CCATC	6 cut(s)	162, 857, 983, 1092, 1268, 1567
BceAI	ACGGC	1 cut(s)	1532
BciT130I	CCWGG	4 cut(s)	109, 291, 578, 600
BclI	TGATCA	9 cut(s)	382, 670, 676, 730, 736, 856, 886, 1093, 1312
BcoDI	GTCTC	4 cut(s)	575, 842, 1127, 1503
BcuI	ACTAGT	2 cut(s)	377, 1445
BfaI	CTAG	4 cut(s)	378, 411, 767, 1446
BfmI	CTRYAG	2 cut(s)	703, 1040
Bme1390I	CCNGG	4 cut(s)	109, 291, 578, 600
Bme18I	GGWCC	3 cut(s)	781, 923, 1552
BmgT120I	GGNCC	5 cut(s)	459, 602, 781, 923, 1552
BmiI	GGNNCC	3 cut(s)	106, 1050, 1554
BmrFI	CCNGG	4 cut(s)	109, 291, 578, 600
BmrI	ACTGGG	2 cut(s)	653, 1510
BmuI	ACTGGG	2 cut(s)	653, 1510
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	2 cut(s)	130, 599
Bsa29I	ATCGAT	1 cut(s)	1532
BsaBI	GATNNNNATC	5 cut(s)	675, 681, 735, 1311, 1491
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	4 cut(s)	576, 599, 1101, 1548
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 456, 599, 600
Bse1I	ACTGG	4 cut(s)	326, 450, 659, 1505
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	5 cut(s)	675, 681, 735, 1311, 1491
BseBI	CCWGG	4 cut(s)	109, 291, 578, 600
BseCI	ATCGAT	1 cut(s)	1532
BseDI	CCNNGG	4 cut(s)	576, 599, 1101, 1548
BseGI	GGATG	4 cut(s)	682, 928, 970, 1279
BseJI	GATNNNNATC	5 cut(s)	675, 681, 735, 1311, 1491
BseLI	CCNNNNNNNGG	4 cut(s)	360, 456, 599, 600
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	4 cut(s)	326, 450, 659, 1505
BseRI	GAGGAG	7 cut(s)	74, 827, 830, 833, 836, 839, 1433
BseYI	CCCAGC	1 cut(s)	456
BshFI	GGCC	4 cut(s)	364, 461, 604, 1547
BshVI	ATCGAT	1 cut(s)	1532
BsiHKAI	GWGCWC	2 cut(s)	794, 1163
BslI	CCNNNNNNNGG	4 cut(s)	360, 456, 599, 600
BsmAI	GTCTC	4 cut(s)	575, 842, 1127, 1503
BsmBI	CGTCTC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	4 cut(s)	364, 461, 604, 1547
Bsp1286I	GDGCHC	2 cut(s)	794, 1163
Bsp19I	CCATGG	1 cut(s)	1101
BspACI	CCGC	5 cut(s)	142, 441, 745, 779, 975
BspANI	GGCC	4 cut(s)	364, 461, 604, 1547
BspCNI	CTCAG	1 cut(s)	802
BspDI	ATCGAT	1 cut(s)	1532
BspHI	TCATGA	7 cut(s)	673, 727, 733, 786, 859, 1114, 1378
BspLI	GGNNCC	3 cut(s)	106, 1050, 1554
BspMAI	CTGCAG	2 cut(s)	707, 1044
BspPI	GGATC	4 cut(s)	72, 1043, 1056, 1383
BspQI	GCTCTTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	777
BsrI	ACTGG	4 cut(s)	326, 450, 659, 1505
BssECI	CCNNGG	4 cut(s)	576, 599, 1101, 1548
BssNI	GRCGYC	1 cut(s)	590
BssSI	CACGAG	1 cut(s)	852
BssT1I	CCWWGG	1 cut(s)	1101
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	4 cut(s)	109, 291, 578, 600
Bst6I	CTCTTC	3 cut(s)	191, 430, 464
BstACI	GRCGYC	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	246, 777
BstDEI	CTNAG	2 cut(s)	164, 810
BstDSI	CCRYGG	2 cut(s)	1101, 1548
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	4 cut(s)	682, 928, 970, 1279
BstMAI	GTCTC	4 cut(s)	575, 842, 1127, 1503
BstMWI	GCNNNNNNNGC	8 cut(s)	776, 1241, 1289, 1292, 1466, 1469, 1472, 1577
BstNI	CCWGG	4 cut(s)	109, 291, 578, 600
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	4 cut(s)	107, 289, 576, 598
BstSFI	CTRYAG	2 cut(s)	703, 1040
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	1048
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	1048
Bsu15I	ATCGAT	1 cut(s)	1532
BsuRI	GGCC	4 cut(s)	364, 461, 604, 1547
BsuTUI	ATCGAT	1 cut(s)	1532
BtgI	CCRYGG	2 cut(s)	1101, 1548
BtgZI	GCGATG	1 cut(s)	1586
BtsCI	GGATG	4 cut(s)	682, 928, 970, 1279
BtsIMutI	CAGTG	2 cut(s)	896, 1518
Cac8I	GCNNGC	2 cut(s)	246, 777
CaiI	CAGNNNCTG	5 cut(s)	407, 456, 665, 1244, 1247
CciI	TCATGA	7 cut(s)	673, 727, 733, 786, 859, 1114, 1378
Cfr13I	GGNCC	5 cut(s)	459, 602, 781, 923, 1552
ClaI	ATCGAT	1 cut(s)	1532
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	1005, 1425
CviQI	GTAC	2 cut(s)	1005, 1425
DdeI	CTNAG	2 cut(s)	164, 810
DrdI	GACNNNNNNGTC	1 cut(s)	707
DseDI	GACNNNNNNGTC	1 cut(s)	707
Eam1104I	CTCTTC	3 cut(s)	191, 430, 464
EarI	CTCTTC	3 cut(s)	191, 430, 464
Ecl136II	GAGCTC	2 cut(s)	792, 1161
Eco130I	CCWWGG	1 cut(s)	1101
Eco147I	AGGCCT	1 cut(s)	364
Eco24I	GRGCYC	2 cut(s)	794, 1163
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	3 cut(s)	781, 923, 1552
Eco53kI	GAGCTC	2 cut(s)	792, 1161
Eco57I	CTGAAG	4 cut(s)	56, 340, 1215, 1221
EcoICRI	GAGCTC	2 cut(s)	792, 1161
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoRII	CCWGG	4 cut(s)	107, 289, 576, 598
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	1101
EcoT38I	GRGCYC	2 cut(s)	794, 1163
ErhI	CCWWGG	1 cut(s)	1101
Esp3I	CGTCTC	1 cut(s)	575
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FbaI	TGATCA	9 cut(s)	382, 670, 676, 730, 736, 856, 886, 1093, 1312
FblI	GTMKAC	1 cut(s)	711
FokI	GGATG	4 cut(s)	669, 915, 977, 1286
FriOI	GRGCYC	2 cut(s)	794, 1163
FspBI	CTAG	4 cut(s)	378, 411, 767, 1446
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	2 cut(s)	130, 599
HaeIII	GGCC	4 cut(s)	364, 461, 604, 1547
HgaI	GACGC	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	590
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	2 cut(s)	850, 968
Hpy166II	GTNNAC	3 cut(s)	51, 712, 1552
Hpy188I	TCNGA	2 cut(s)	359, 897
Hpy8I	GTNNAC	3 cut(s)	51, 712, 1552
Hpy99I	CGWCG	1 cut(s)	944
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	7 cut(s)	131, 159, 244, 628, 705, 1042, 1295
HpyF10VI	GCNNNNNNNGC	8 cut(s)	776, 1241, 1289, 1292, 1466, 1469, 1472, 1577
HpyF3I	CTNAG	2 cut(s)	164, 810
HpySE526I	ACGT	1 cut(s)	514
Hsp92I	GRCGYC	1 cut(s)	590
Ksp22I	TGATCA	9 cut(s)	382, 670, 676, 730, 736, 856, 886, 1093, 1312
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	110
MaeI	CTAG	4 cut(s)	378, 411, 767, 1446
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	7 cut(s)	20, 135, 515, 905, 1035, 1079, 1108
MflI	RGATCY	1 cut(s)	1048
MhlI	GDGCHC	2 cut(s)	794, 1163
MluCI	AATT	8 cut(s)	175, 239, 284, 345, 502, 983, 1016, 1054
MlyI	GAGTC	1 cut(s)	844
MseI	TTAA	7 cut(s)	74, 174, 647, 723, 1011, 1076, 1497
MslI	CAYNNNNRTG	4 cut(s)	732, 1089, 1095, 1383
MspA1I	CMGCKG	4 cut(s)	407, 745, 779, 1244
MspR9I	CCNGG	4 cut(s)	109, 291, 578, 600
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	4 cut(s)	109, 291, 578, 600
MwoI	GCNNNNNNNGC	8 cut(s)	776, 1241, 1289, 1292, 1466, 1469, 1472, 1577
NcoI	CCATGG	1 cut(s)	1101
NlaIV	GGNNCC	3 cut(s)	106, 1050, 1554
NmuCI	GTSAC	3 cut(s)	515, 905, 1079
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	7 cut(s)	673, 727, 733, 786, 859, 1114, 1378
PceI	AGGCCT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	464
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	968
PflMI	CCANNNNNTGG	1 cut(s)	456
PfoI	TCCNGGA	1 cut(s)	107
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PshBI	ATTAAT	2 cut(s)	174, 647
Psp124BI	GAGCTC	2 cut(s)	794, 1163
Psp6I	CCWGG	4 cut(s)	107, 289, 576, 598
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	4 cut(s)	107, 289, 576, 598
PspN4I	GGNNCC	3 cut(s)	106, 1050, 1554
PspPI	GGNCC	5 cut(s)	459, 602, 781, 923, 1552
PstI	CTGCAG	2 cut(s)	707, 1044
PstNI	CAGNNNCTG	5 cut(s)	407, 456, 665, 1244, 1247
PsuI	RGATCY	1 cut(s)	1048
PvuII	CAGCTG	2 cut(s)	407, 1244
RsaI	GTAC	2 cut(s)	1006, 1426
RsaNI	GTAC	2 cut(s)	1005, 1425
RseI	CAYNNNNRTG	4 cut(s)	732, 1089, 1095, 1383
SacI	GAGCTC	2 cut(s)	794, 1163
SalI	GTCGAC	1 cut(s)	710
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	7 cut(s)	74, 174, 647, 723, 1011, 1076, 1497
Sau96I	GGNCC	5 cut(s)	459, 602, 781, 923, 1552
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	4 cut(s)	109, 291, 578, 600
SduI	GDGCHC	2 cut(s)	794, 1163
SfcI	CTRYAG	2 cut(s)	703, 1040
SinI	GGWCC	3 cut(s)	781, 923, 1552
SmiMI	CAYNNNNRTG	4 cut(s)	732, 1089, 1095, 1383
SpeI	ACTAGT	2 cut(s)	377, 1445
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	8 cut(s)	175, 239, 284, 345, 502, 983, 1016, 1054
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	5 cut(s)	142, 441, 745, 779, 975
SspI	AATATT	4 cut(s)	421, 547, 616, 883
SspMI	CTAG	4 cut(s)	378, 411, 767, 1446
SstI	GAGCTC	2 cut(s)	794, 1163
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	4 cut(s)	107, 289, 576, 598
StyI	CCWWGG	1 cut(s)	1101
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	3 cut(s)	711, 1353, 1532
TasI	AATT	8 cut(s)	175, 239, 284, 345, 502, 983, 1016, 1054
TauI	GCSGC	2 cut(s)	748, 978
TfiI	GAWTC	1 cut(s)	968
Tru1I	TTAA	7 cut(s)	74, 174, 647, 723, 1011, 1076, 1497
Tru9I	TTAA	7 cut(s)	74, 174, 647, 723, 1011, 1076, 1497
TscAI	CASTG	2 cut(s)	896, 1525
TseFI	GTSAC	3 cut(s)	515, 905, 1079
Tsp45I	GTSAC	3 cut(s)	515, 905, 1079
TspDTI	ATGAA	4 cut(s)	321, 479, 981, 1029
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	896, 1525
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	3 cut(s)	781, 923, 1552
VspI	ATTAAT	2 cut(s)	174, 647
XagI	CCTNNNNNAGG	1 cut(s)	358
XapI	RAATTY	2 cut(s)	983, 1054
XceI	RCATGY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	4 cut(s)	378, 411, 767, 1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.