Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_192

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1959 .. 2330

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I002500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAAACACCCTCTGGCCGCAAGAAAGGAAGCGCCAAAGAGCATTCTTTCTTTTTTGGACTAGCACTTATTCTGCAACTGGACATTGAGGGCATCAGGACATTATTTCATACTTTCTTCCGCTTGCCCACCTGGGTTTCCTTGGCTCCACTTTGTCCTGATCTCATGCTTTTTGCCATGTACATGTTTGTTATAGCACCAAATATTTTGAGAAACAGACATCTACTTTCTGATCCTACTGGAGCCACTGTGATAAGAACCTATCTCACCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016853 GO:0016860 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045435 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

92

Amino Acids

10.37

Weight (kDa)

9.51

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	19, 121
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	131
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	133
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	147, 244
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	132, 141
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bse1I	ACTGG	2 cut(s)	84, 244
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	132, 141
BseNI	ACTGG	2 cut(s)	84, 244
BshFI	GGCC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	18
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	160, 232
BspACI	CCGC	2 cut(s)	19, 121
BspANI	GGCC	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	147, 244
BspPI	GGATC	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	84, 244
BssECI	CCNNGG	2 cut(s)	132, 141
BssMI	GATC	2 cut(s)	160, 232
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	250
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	163, 235
BstMBI	GATC	2 cut(s)	160, 232
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	3 cut(s)	166, 178, 184
CviJI	RGCY	3 cut(s)	18, 146, 245
CviKI_1	RGCY	3 cut(s)	18, 146, 245
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	2 cut(s)	162, 234
DpnII	GATC	2 cut(s)	160, 232
EaeI	YGGCCR	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	169, 181, 187
FaiI	YATR	6 cut(s)	111, 167, 179, 185, 194, 274
FatI	CATG	3 cut(s)	165, 177, 183
Fnu4HI	GCNGC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	169, 181, 187
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	97, 158
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	169, 181, 187
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	160, 232
LmnI	GCTCC	2 cut(s)	151, 242
LpnPI	CCDG	6 cut(s)	65, 82, 118, 145, 171, 225
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	62
MalI	GATC	2 cut(s)	162, 234
MboI	GATC	2 cut(s)	160, 232
MboII	GAAGA	1 cut(s)	109
MnlI	CCTC	2 cut(s)	22, 82
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	160, 232
NlaIII	CATG	3 cut(s)	169, 181, 187
NlaIV	GGNNCC	2 cut(s)	147, 244
NspI	RCATGY	1 cut(s)	187
PciI	ACATGT	1 cut(s)	183
PctI	GAATGC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	20
PscI	ACATGT	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	147, 244
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	182
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	160, 232
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	2 cut(s)	134, 263
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	182
SsiI	CCGC	2 cut(s)	19, 121
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	21
TscAI	CASTG	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	253
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.