pycom01g02090

GDP-mannose 3,5-epimerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
1767465 .. 1768020
556 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGAAAATAGTACAATGCCCTTTCTTAACTAAGATAATTACAAAACTATATCTTCTTCATTGTATGGTCTTTAGAAGTGACCAAGTTTACCAGCTCTTGAAGTTTAGTGGGCTGTGTTATGTTCGTTTGGGTCCTTTAGGTACCGTTTGGTACGCAAACGGGATGGGACGGAGGTTCCGTGTTATGTTTGGTATGTGTAGGACGGAATGGGACGGCTGTTCCATTTTGTGTTTGGTAAGCCCATGTTCTGTTTGTTGCTTGGTACAATGTTTATGCGTGGGACGGGACGGGACAATTTTTTTTTTAAACTTGTTCATATTTGAACACATATATGTGTTATGCCATGAATTCCATCTTGCTGACCTCAAAATCATGGATAATTGCTTGAAGGTTACTAAGAATGTTGAACCATTTGATCTTGATGTGAATAAACGATTCAAGGGGACTTGGATCCAAATCATATGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

18.16

Weight (kDa)

8.66

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 140
AclWI GGATC 2 cut(s) 445, 458
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 4 cut(s) 12, 142, 152, 264
AgsI TTSAA 5 cut(s) 100, 323, 388, 407, 439
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AlwI GGATC 2 cut(s) 445, 458
ApoI RAATTY 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 140
BccI CCATC 2 cut(s) 157, 360
BceAI ACGGC 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 4 cut(s) 132, 142, 176, 452
BsaBI GATNNNNATC 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bse8I GATNNNNATC 1 cut(s) 455
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 455
BshNI GGYRCC 1 cut(s) 140
BslFI GGGAC 6 cut(s) 180, 224, 294, 299, 304, 457
BsmFI GGGAC 6 cut(s) 180, 224, 294, 299, 304, 457
Bsp143I GATC 2 cut(s) 415, 450
BspLI GGNNCC 4 cut(s) 132, 142, 176, 452
BspPI GGATC 2 cut(s) 445, 458
BspT107I GGYRCC 1 cut(s) 140
BssMI GATC 2 cut(s) 415, 450
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 30, 396
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 2 cut(s) 418, 453
BstMBI GATC 2 cut(s) 415, 450
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BtsCI GGATG 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 4 cut(s) 11, 141, 151, 263
CviAII CATG 3 cut(s) 243, 344, 373
CviJI RGCY 4 cut(s) 94, 112, 216, 240
CviKI_1 RGCY 4 cut(s) 94, 112, 216, 240
CviQI GTAC 4 cut(s) 11, 141, 151, 263
DdeI CTNAG 2 cut(s) 30, 396
DpnI GATC 2 cut(s) 417, 452
DpnII GATC 2 cut(s) 415, 450
DraI TTTAAA 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 347
FaeI CATG 3 cut(s) 246, 347, 376
FaqI GGGAC 6 cut(s) 180, 224, 294, 299, 304, 457
FatI CATG 3 cut(s) 242, 343, 372
FauNDI CATATG 1 cut(s) 461
FokI GGATG 1 cut(s) 175
Hin1II CATG 3 cut(s) 246, 347, 376
HinfI GANTC 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 97, 419
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 30, 396
Hsp92II CATG 3 cut(s) 246, 347, 376
KpnI GGTACC 1 cut(s) 144
Kzo9I GATC 2 cut(s) 415, 450
LpnPI CCDG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 77, 391
MalI GATC 2 cut(s) 417, 452
MboI GATC 2 cut(s) 415, 450
MboII GAAGA 2 cut(s) 44, 47
MflI RGATCY 1 cut(s) 450
MluCI AATT 4 cut(s) 36, 294, 347, 379
MnlI CCTC 2 cut(s) 165, 374
MseI TTAA 3 cut(s) 26, 305, 469
MslI CAYNNNNRTG 2 cut(s) 330, 332
NdeI CATATG 1 cut(s) 461
NdeII GATC 2 cut(s) 415, 450
NlaIII CATG 3 cut(s) 246, 347, 376
NlaIV GGNNCC 4 cut(s) 132, 142, 176, 452
NmuCI GTSAC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PfeI GAWTC 1 cut(s) 435
PpuMI RGGWCCY 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 131
PspN4I GGNNCC 4 cut(s) 132, 142, 176, 452
PspPI GGNCC 1 cut(s) 131
PspPPI RGGWCCY 1 cut(s) 131
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 4 cut(s) 12, 142, 152, 264
RsaNI GTAC 4 cut(s) 11, 141, 151, 263
RseI CAYNNNNRTG 2 cut(s) 330, 332
SaqAI TTAA 3 cut(s) 26, 305, 469
Sau3AI GATC 2 cut(s) 415, 450
Sau96I GGNCC 1 cut(s) 131
SetI ASST 5 cut(s) 96, 142, 176, 366, 393
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 330, 332
Sse9I AATT 4 cut(s) 36, 294, 347, 379
TaaI ACNGT 1 cut(s) 145
TasI AATT 4 cut(s) 36, 294, 347, 379
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 3 cut(s) 26, 305, 469
Tru9I TTAA 3 cut(s) 26, 305, 469
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 17, 47, 304, 360
TspGWI ACGGA 3 cut(s) 167, 184, 218
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.