pycom01g02170

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
1827221 .. 1828427
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGAAAAACTTCAAGTTTTCAAACAAGGCAATGTTTATAAGAAACTTCAGGTTTCAAATTAGTTATGAACTTCAGGTTCATATATTCCTGCAGGCAAACAAAAATATATATGCAAACAAATATGCAAAATATAATTTTAGTAAAGTGTGGGGCCCAAAAAAAAAAAAAAAAAAAAAACCCTTTGGGTGGTTTAAAAAAATTGTGCCGTGTATCCCAGGCCCTCGGGTGGGCTGGGTTTGTTCTCGGGGTGGGGATGCAGGCCCACGGGGAGGGGAGAAAATGGGGGGGTGCTATGGAAGGCAAGCCCTAAAAAAAAAAACACGGGCTGCCAAAAGCGGACCCCTAAAAAAAATCACCCAAAAATTTTCCCTTTTTTTTTTTTTTTCCTCTTTCTTTCTCATGGGTTGGGGGAACTTAGGGCTGGGGAAACTCCAAAAGCCCAATAAGGGAAATTGGAAACAGGCTGAGAGAGGGAGCCTAAGGAGGGCTCGGGTTTTGGAACCAAAACACCCTAGCATGTGCTGGGTGCGTTTCGCTGGAGAAGAACCGACTCAGATTGAGTCAAGGTGGTTGTTGACGACCATGGTGGTGAACGGAGATGATATAATCTCAACATTTCAAGTGAATCTCGATTCAATTTTTGACGTGGGACGACTTCTGGTTGTTAGCAACATGAACCAAAGGTTCAGGGCAGTGGCTGTAGGCCATGCCATGGTCAACGTGGACGGGGACGCCATTAAAGGGGTTGGGTTTTTTGGGTTGGCTCCTGGATCTCTCGTGCTTGAGGTCATGGGTTCGAAGAATCCAGGCCGTGATTCCCAATTTCATTTTTATTTTCGTTTTTGTTGTTTTAATTCAAATATAATTCAATTATATCATATTCAAAATAATAATATGTTAATAGAAATCAATTTGATGCATATACAAAAATATTTGATGCAATTCATAGCAAATATCAAATTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

323

Amino Acids

36.89

Weight (kDa)

10.28

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 712
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 778
AcsI RAATTY 2 cut(s) 362, 959
AcuI CTGAAG 2 cut(s) 31, 56
AcyI GRCGYC 1 cut(s) 732
AfiI CCNNNNNNNGG 8 cut(s) 186, 226, 227, 269, 446, 484, 712, 741
AgsI TTSAA 8 cut(s) 13, 21, 56, 620, 636, 858, 869, 884
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 3 cut(s) 214, 766, 805
AlwI GGATC 1 cut(s) 778
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 3 cut(s) 222, 243, 489
AoxI GGCC 5 cut(s) 151, 217, 259, 703, 808
ApaI GGGCCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 362, 959
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 5 cut(s) 151, 152, 218, 260, 338
AsuHPI GGTGA 2 cut(s) 346, 601
AsuII TTCGAA 1 cut(s) 797
AvaI CYCGRG 3 cut(s) 222, 243, 489
AvaII GGWCC 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 155
BanII GRGCYC 2 cut(s) 155, 490
BauI CACGAG 1 cut(s) 776
BbvI GCAGC 1 cut(s) 313
BceAI ACGGC 2 cut(s) 190, 795
BciT130I CCWGG 3 cut(s) 216, 768, 807
BciVI GTATCC 1 cut(s) 221
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 2 cut(s) 89, 699
BfuI GTATCC 1 cut(s) 221
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 3 cut(s) 216, 768, 807
Bme18I GGWCC 1 cut(s) 338
BmeT110I CYCGRG 3 cut(s) 222, 243, 489
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 5 cut(s) 151, 152, 218, 260, 338
BmiI GGNNCC 6 cut(s) 152, 153, 340, 476, 501, 765
BmrFI CCNGG 3 cut(s) 216, 768, 807
BmsI GCATC 3 cut(s) 244, 906, 927
BpmI CTGGAG 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 797
BpuEI CTTGAG 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 5 cut(s) 214, 221, 263, 582, 711
Bsc4I CCNNNNNNNGG 8 cut(s) 186, 226, 227, 269, 446, 484, 712, 741
Bse21I CCTNAGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 3 cut(s) 216, 768, 807
BseDI CCNNGG 5 cut(s) 214, 221, 263, 582, 711
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 8 cut(s) 186, 226, 227, 269, 446, 484, 712, 741
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 456, 566
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 3 cut(s) 231, 421, 522
BshFI GGCC 5 cut(s) 153, 219, 261, 705, 810
BsiHKCI CYCGRG 3 cut(s) 222, 243, 489
BslFI GGGAC 2 cut(s) 663, 743
BslI CCNNNNNNNGG 8 cut(s) 186, 226, 227, 269, 446, 484, 712, 741
BsmFI GGGAC 2 cut(s) 663, 743
BsnI GGCC 5 cut(s) 153, 219, 261, 705, 810
BsoBI CYCGRG 3 cut(s) 222, 243, 489
Bsp119I TTCGAA 1 cut(s) 797
Bsp120I GGGCCC 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 155, 490
Bsp143I GATC 1 cut(s) 770
Bsp19I CCATGG 2 cut(s) 582, 711
BspACI CCGC 1 cut(s) 336
BspANI GGCC 5 cut(s) 153, 219, 261, 705, 810
BspCNI CTCAG 2 cut(s) 457, 565
BspLI GGNNCC 6 cut(s) 152, 153, 340, 476, 501, 765
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 1 cut(s) 778
BspT104I TTCGAA 1 cut(s) 797
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 5 cut(s) 214, 221, 263, 582, 711
BssMI GATC 1 cut(s) 770
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 776
BssT1I CCWWGG 2 cut(s) 582, 711
Bst2BI CACGAG 1 cut(s) 776
Bst2UI CCWGG 3 cut(s) 216, 768, 807
BstACI GRCGYC 1 cut(s) 732
BstBI TTCGAA 1 cut(s) 797
BstC8I GCNNGC 3 cut(s) 93, 259, 303
BstDEI CTNAG 4 cut(s) 415, 465, 479, 552
BstDSI CCRYGG 3 cut(s) 263, 582, 711
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 1 cut(s) 773
BstMBI GATC 1 cut(s) 770
BstNI CCWGG 3 cut(s) 216, 768, 807
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 3 cut(s) 214, 766, 805
BstSFI CTRYAG 2 cut(s) 89, 699
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 770
BstYI RGATCY 1 cut(s) 770
Bsu36I CCTNAGG 1 cut(s) 479
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 5 cut(s) 153, 219, 261, 705, 810
BtgI CCRYGG 3 cut(s) 263, 582, 711
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 1 cut(s) 699
Cac8I GCNNGC 3 cut(s) 93, 259, 303
CaiI CAGNNNCTG 1 cut(s) 698
Cfr13I GGNCC 5 cut(s) 151, 152, 218, 260, 338
CseI GACGC 1 cut(s) 740
CviAII CATG 7 cut(s) 400, 517, 583, 673, 707, 712, 790
DdeI CTNAG 4 cut(s) 415, 465, 479, 552
DpnI GATC 1 cut(s) 772
DpnII GATC 1 cut(s) 770
DraI TTTAAA 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 582, 711
Eco24I GRGCYC 2 cut(s) 155, 490
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 2 cut(s) 31, 56
Eco81I CCTNAGG 1 cut(s) 479
Eco88I CYCGRG 3 cut(s) 222, 243, 489
EcoO109I RGGNCCY 2 cut(s) 151, 218
EcoRII CCWGG 3 cut(s) 214, 766, 805
EcoT14I CCWWGG 2 cut(s) 582, 711
EcoT22I ATGCAT 1 cut(s) 921
EcoT38I GRGCYC 2 cut(s) 155, 490
ErhI CCWWGG 2 cut(s) 582, 711
FaeI CATG 7 cut(s) 403, 520, 586, 676, 710, 715, 793
FaqI GGGAC 2 cut(s) 663, 743
FatI CATG 7 cut(s) 399, 516, 582, 672, 706, 711, 789
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 2 cut(s) 155, 490
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 1 cut(s) 513
GluI GCNGC 1 cut(s) 327
GsaI CCCAGC 3 cut(s) 235, 425, 526
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 5 cut(s) 153, 219, 261, 705, 810
HgaI GACGC 1 cut(s) 740
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 7 cut(s) 403, 520, 586, 676, 710, 715, 793
HincII GTYRAC 2 cut(s) 576, 718
HindII GTYRAC 2 cut(s) 576, 718
HinfI GANTC 6 cut(s) 550, 560, 625, 632, 802, 815
HphI GGTGA 2 cut(s) 346, 601
Hpy166II GTNNAC 4 cut(s) 576, 592, 718, 724
Hpy188I TCNGA 1 cut(s) 555
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 4 cut(s) 576, 592, 718, 724
HpyAV CCTTC 1 cut(s) 291
HpyCH4IV ACGT 2 cut(s) 645, 720
HpyCH4V TGCA 6 cut(s) 91, 113, 125, 257, 919, 940
HpyF3I CTNAG 4 cut(s) 415, 465, 479, 552
HpySE526I ACGT 2 cut(s) 645, 720
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 7 cut(s) 403, 520, 586, 676, 710, 715, 793
Kzo9I GATC 1 cut(s) 770
LmnI GCTCC 2 cut(s) 474, 769
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 3 cut(s) 244, 906, 927
MaeI CTAG 1 cut(s) 513
MaeII ACGT 2 cut(s) 645, 720
MalI GATC 1 cut(s) 772
MboI GATC 1 cut(s) 770
MboII GAAGA 2 cut(s) 554, 811
MflI RGATCY 1 cut(s) 770
MhlI GDGCHC 2 cut(s) 155, 490
MlyI GAGTC 2 cut(s) 544, 569
MnlI CCTC 6 cut(s) 231, 263, 397, 464, 477, 778
Mph1103I ATGCAT 1 cut(s) 921
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 192, 738, 852, 899
MslI CAYNNNNRTG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 216, 768, 807
MvaI CCWGG 3 cut(s) 216, 768, 807
NcoI CCATGG 2 cut(s) 582, 711
NdeII GATC 1 cut(s) 770
NlaIII CATG 7 cut(s) 403, 520, 586, 676, 710, 715, 793
NlaIV GGNNCC 6 cut(s) 152, 153, 340, 476, 501, 765
NsiI ATGCAT 1 cut(s) 921
NspI RCATGY 1 cut(s) 520
NspV TTCGAA 1 cut(s) 797
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 625, 632, 802, 815
PflMI CCANNNNNTGG 1 cut(s) 712
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 2 cut(s) 544, 568
PpsI GAGTC 2 cut(s) 544, 568
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 214, 766, 805
PspFI CCCAGC 3 cut(s) 231, 421, 522
PspGI CCWGG 3 cut(s) 214, 766, 805
PspN4I GGNNCC 6 cut(s) 152, 153, 340, 476, 501, 765
PspOMI GGGCCC 1 cut(s) 151
PspPI GGNCC 5 cut(s) 151, 152, 218, 260, 338
PstI CTGCAG 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 770
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 4 cut(s) 192, 738, 852, 899
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 1 cut(s) 770
Sau96I GGNCC 5 cut(s) 151, 152, 218, 260, 338
SbfI CCTGCAGG 1 cut(s) 93
SchI GAGTC 2 cut(s) 544, 569
ScrFI CCNGG 3 cut(s) 216, 768, 807
SdaI CCTGCAGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 155, 490
SetI ASST 7 cut(s) 53, 78, 569, 648, 686, 723, 789
SfaNI GCATC 3 cut(s) 244, 906, 927
SfcI CTRYAG 2 cut(s) 89, 699
SfuI TTCGAA 1 cut(s) 797
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse8387I CCTGCAGG 1 cut(s) 93
SsiI CCGC 1 cut(s) 336
SspI AATATT 1 cut(s) 932
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 3 cut(s) 214, 766, 805
StyI CCWWGG 2 cut(s) 582, 711
TaiI ACGT 2 cut(s) 648, 723
TaqI TCGA 2 cut(s) 630, 797
TfiI GAWTC 4 cut(s) 625, 632, 802, 815
Tru1I TTAA 4 cut(s) 192, 738, 852, 899
Tru9I TTAA 4 cut(s) 192, 738, 852, 899
TscAI CASTG 1 cut(s) 699
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 6 cut(s) 17, 68, 81, 689, 815, 934
TspGWI ACGGA 1 cut(s) 609
TspRI CASTG 1 cut(s) 699
Van91I CCANNNNNTGG 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 2 cut(s) 362, 959
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 513
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.