pycom01g03140

dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
2499891 .. 2500454
564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGTGTACGCGAACAACATTCGCTCTAGGCAATGTGGTTTCCCCGCGTCTTCCACAAATGGTTGTTTCTAAAAATAAAATGCAAAACTCTGAATCTTTTAATGTAGTTAATATTAAAGATAGAAGCTGGGCCTTGATGAAGGGTATCACTCCCCAAGTGATAAATATTGATGTTTATGTCTATTGTAGGGAAAATGCTGATGATGATGTAACAATTAAGGTCCTCTTCTGTGGGGTTTGCCATTCAGACTTACATTCTGCCAAGAACGAATGGGGTTTCACCAACTTCCCTGTTGTGCCGGGGTATTTAGTTAACTCAGATCACCCTCGCAAAACCGAGCGCAATGGTATTCTAGAATTCATACAATTGATCTCACTTACTAGGATAAGGCTTTGTTATTGTTGTTGTATATCTCATGGCTTTGATTTTTTTGTTTACAACAACAACAACAACAAAACCTTATCCCACTAA

Protein Analysis

157

Amino Acids

17.84

Weight (kDa)

8.43

Isoelectric Point (pI)

29.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 10, 46
AciI CCGC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 1 cut(s) 7
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
AoxI GGCC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 356
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 129, 220
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 271, 314
AvaII GGWCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 41
BcnI CCSGG 1 cut(s) 300
BfaI CTAG 3 cut(s) 26, 353, 381
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 129, 220
BmrFI CCNGG 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 299
Bse3DI GCAATG 2 cut(s) 37, 349
BseDI CCNNGG 1 cut(s) 299
BseMI GCAATG 2 cut(s) 37, 349
BseMII CTCAG 1 cut(s) 330
BseYI CCCAGC 1 cut(s) 126
Bsh1236I CGCG 2 cut(s) 10, 46
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 299
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 319, 369
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 329
BspFNI CGCG 2 cut(s) 10, 46
BsrDI GCAATG 2 cut(s) 37, 349
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 319, 369
Bst6I CTCTTC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 316
BstFNI CGCG 2 cut(s) 10, 46
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 2 cut(s) 322, 372
BstMBI GATC 2 cut(s) 319, 369
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 2 cut(s) 10, 46
BstV2I GAAGAC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 131
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 129, 220
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 416
CviJI RGCY 4 cut(s) 126, 131, 391, 420
CviKI_1 RGCY 4 cut(s) 126, 131, 391, 420
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 316
DpnI GATC 2 cut(s) 321, 371
DpnII GATC 2 cut(s) 319, 369
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 356
FaeI CATG 1 cut(s) 419
FaiI YATR 4 cut(s) 177, 362, 410, 417
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 1 cut(s) 415
FauI CCCGC 1 cut(s) 51
FspBI CTAG 3 cut(s) 26, 353, 381
GlaI GCGC 1 cut(s) 341
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 342
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 1 cut(s) 92
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 271, 314
Hpy166II GTNNAC 3 cut(s) 6, 313, 436
Hpy188I TCNGA 3 cut(s) 91, 247, 319
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 3 cut(s) 6, 313, 436
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 316
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 1 cut(s) 340
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 319, 369
LpnPI CCDG 3 cut(s) 112, 303, 312
MaeI CTAG 3 cut(s) 26, 353, 381
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 321, 371
MboI GATC 2 cut(s) 319, 369
MboII GAAGA 2 cut(s) 41, 217
MfeI CAATTG 1 cut(s) 365
MluCI AATT 3 cut(s) 213, 356, 365
MnlI CCTC 2 cut(s) 233, 336
MseI TTAA 5 cut(s) 99, 108, 114, 216, 312
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 365
MvnI CGCG 2 cut(s) 10, 46
NciI CCSGG 1 cut(s) 300
NdeII GATC 2 cut(s) 319, 369
NlaIII CATG 1 cut(s) 419
PfeI GAWTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 126
PspPI GGNCC 2 cut(s) 129, 220
PspPPI RGGWCCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 5 cut(s) 99, 108, 114, 216, 312
Sau3AI GATC 2 cut(s) 319, 369
Sau96I GGNCC 2 cut(s) 129, 220
ScrFI CCNGG 1 cut(s) 300
SetI ASST 3 cut(s) 128, 222, 461
SinI GGWCC 1 cut(s) 220
Sse9I AATT 3 cut(s) 213, 356, 365
SsiI CCGC 1 cut(s) 44
SspI AATATT 2 cut(s) 112, 166
SspMI CTAG 3 cut(s) 26, 353, 381
StyD4I CCNGG 1 cut(s) 298
TasI AATT 3 cut(s) 213, 356, 365
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 5 cut(s) 99, 108, 114, 216, 312
Tru9I TTAA 5 cut(s) 99, 108, 114, 216, 312
TspDTI ATGAA 2 cut(s) 152, 349
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 356
XbaI TCTAGA 1 cut(s) 352
XspI CTAG 3 cut(s) 26, 353, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.