Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2501028 .. 2502298

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCATATTACCGTTAAATTAATATTTTTCATCTCAAAATGGTTGTGTTTTCTGACCAAATATCATCTTAAAAGTTGCATTGACGCGTCGGAATTGCTTGTGGATTCTATGCTTTTTTCAGCAAATCTTTGCAGGCATGAAATTGTTGGTGTTGTGACCAATACTGGGAACAATGTGGAGAAATTCAAAGTAGGTGATCGTGTAGGAGTTGGGGTCATAGTGGGTTCCTGCATGAAATGTGATACTTGCCAAGAGGGCTTGGAGAATTACTGCCCTCAAGTAATATTAACCTATAAATCACACTATCATGACCGAACAAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTCACCATCCCTATGTGCTCCGCTTTCCTGATAACGTACCCCCTGATGCGGGTGCACCACTTTTATGTGCTGGGATCACTGTGTACAGTCCAATGAAATATTATGGAATGACCGAGACCGGAAATGACCCTGCCAAATTGAAGGTAATGATAAACAATAAAAAATTGAAAATATATGTAATGTGTGTATTTCAGTGTATTTGGATGTGTACATATGTGTGTGTGTGTGTTTGTAGAATAACTGTGAATATTTATATCACAACAAAGATTACTGCGAATGTGAGAACGAAACAAGGCTCTTTGATACGACAATCTAAAGAAAGAATTGATTGTGCTGCGTGTTCTGCAGATGGATGCCACAATGTTCTTATGGTTCCTCTTCTCAGAATACTAGAAAGGGAAGCGATGGGTAGCATGGATTATATCGTTGACACAGTGTCTGCAGTTCATGCCCTGGCTCCATTAATCGGTCTACTGAAGCTGAACGGGAAGCTGGTCACCGTGGGTTTGCCCGACAAGCCCCTGGAGTTGCCTATCTTCCCTTTAGTTTTGGGTATGATTTTACAACAACTTGACTGTTTCTCTTATAAATTATCTTCTGATAGAATTTGCATTTTTCTTTTGTATATAGGAAAGGATATACCACTTAGTGGGATGAGGCTTTATTGTTGTTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

344

Amino Acids

38.42

Weight (kDa)

8.48

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	46 - 128	7.3e-14	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	939
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccI	GTMKAC	1 cut(s)	823
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	373, 401
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	182, 957
AcuI	CTGAAG	1 cut(s)	848
AdeI	CACNNNGTG	1 cut(s)	1001
AfaI	GTAC	3 cut(s)	390, 437, 562
AfiI	CCNNNNNNNGG	5 cut(s)	165, 400, 401, 818, 1001
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	4 cut(s)	187, 493, 520, 1028
AhdI	GACNNNNNGTC	1 cut(s)	787
AjnI	CCWGG	2 cut(s)	804, 873
AluBI	AGCT	2 cut(s)	832, 844
AluI	AGCT	2 cut(s)	832, 844
Alw21I	GWGCWC	2 cut(s)	372, 409
Alw26I	GTCTC	1 cut(s)	461
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	791
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	2 cut(s)	182, 957
AseI	ATTAAT	2 cut(s)	20, 815
AsuHPI	GGTGA	3 cut(s)	206, 347, 841
BaeGI	GKGCMC	1 cut(s)	409
Bbv12I	GWGCWC	2 cut(s)	372, 409
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	3 cut(s)	366, 695, 751
BciT130I	CCWGG	2 cut(s)	806, 875
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	743
BfmI	CTRYAG	2 cut(s)	696, 792
BglI	GCCNNNNNGGC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	806, 875
BmeRI	GACNNNNNGTC	1 cut(s)	787
BmiI	GGNNCC	3 cut(s)	226, 726, 810
BmrFI	CCNGG	2 cut(s)	806, 875
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	388, 695
BmuI	ACTGGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	896
BpuEI	CTTGAG	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	804, 852, 873
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	5 cut(s)	165, 400, 401, 818, 1001
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	806, 875
BseDI	CCNNGG	3 cut(s)	804, 852, 873
BseGI	GGATG	4 cut(s)	358, 561, 710, 1011
BseLI	CCNNNNNNNGG	5 cut(s)	165, 400, 401, 818, 1001
BseMII	CTCAG	1 cut(s)	748
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	673
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	372, 409
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	5 cut(s)	165, 400, 401, 818, 1001
BsmAI	GTCTC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	372, 409
Bsp1407I	TGTACA	2 cut(s)	435, 560
Bsp143I	GATC	2 cut(s)	196, 426
BspACI	CCGC	2 cut(s)	373, 401
BspCNI	CTCAG	1 cut(s)	747
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	226, 726, 810
BspMAI	CTGCAG	2 cut(s)	700, 796
BspPI	GGATC	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	461
BsrGI	TGTACA	2 cut(s)	435, 560
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	804, 852, 873
BssMI	GATC	2 cut(s)	196, 426
Bst2UI	CCWGG	2 cut(s)	806, 875
Bst4CI	ACNGT	7 cut(s)	13, 433, 440, 595, 787, 853, 929
Bst6I	CTCTTC	1 cut(s)	735
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstAUI	TGTACA	2 cut(s)	435, 560
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	734, 998
BstDSI	CCRYGG	1 cut(s)	852
BstEII	GGTNACC	1 cut(s)	847
BstF5I	GGATG	4 cut(s)	358, 561, 710, 1011
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	199, 429
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	196, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 695, 800, 868
BstNI	CCWGG	2 cut(s)	806, 875
BstPI	GGTNACC	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	804, 873
BstSFI	CTRYAG	2 cut(s)	696, 792
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	673
BtgI	CCRYGG	1 cut(s)	852
BtgZI	GCGATG	1 cut(s)	770
BtsCI	GGATG	4 cut(s)	358, 561, 710, 1011
BtsIMutI	CAGTG	3 cut(s)	429, 551, 792
Cac8I	GCNNGC	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	791
CciI	TCATGA	1 cut(s)	307
CseI	GACGC	2 cut(s)	75, 92
Csp6I	GTAC	3 cut(s)	389, 436, 561
CviAII	CATG	5 cut(s)	137, 232, 308, 766, 800
CviJI	RGCY	7 cut(s)	258, 648, 809, 832, 844, 871, 1012
CviKI_1	RGCY	7 cut(s)	258, 648, 809, 832, 844, 871, 1012
CviQI	GTAC	3 cut(s)	389, 436, 561
DdeI	CTNAG	2 cut(s)	734, 998
DpnI	GATC	2 cut(s)	198, 428
DpnII	GATC	2 cut(s)	196, 426
DraIII	CACNNNGTG	1 cut(s)	1001
DriI	GACNNNNNGTC	1 cut(s)	787
Eam1104I	CTCTTC	1 cut(s)	735
Eam1105I	GACNNNNNGTC	1 cut(s)	787
EarI	CTCTTC	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	848
Eco91I	GGTNACC	1 cut(s)	847
EcoO65I	GGTNACC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	804, 873
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	140, 235, 311, 769, 803
FatI	CATG	5 cut(s)	136, 231, 307, 765, 799
FauI	CCCGC	1 cut(s)	394
FauNDI	CATATG	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	823
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	4 cut(s)	345, 568, 717, 1018
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	1 cut(s)	743
GluI	GCNGC	1 cut(s)	687
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	896
HapII	CCGG	1 cut(s)	471
HgaI	GACGC	2 cut(s)	75, 92
Hin1II	CATG	5 cut(s)	140, 235, 311, 769, 803
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	3 cut(s)	206, 347, 841
Hpy166II	GTNNAC	6 cut(s)	355, 407, 436, 561, 781, 824
Hpy188I	TCNGA	5 cut(s)	54, 91, 340, 737, 952
Hpy188III	TCNNGA	2 cut(s)	308, 380
Hpy8I	GTNNAC	6 cut(s)	355, 407, 436, 561, 781, 824
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	7 cut(s)	13, 433, 440, 595, 787, 853, 929
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	8 cut(s)	4, 78, 132, 231, 407, 698, 794, 963
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 695, 800, 868
HpyF3I	CTNAG	2 cut(s)	734, 998
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	140, 235, 311, 769, 803
Kzo9I	GATC	2 cut(s)	196, 426
LmnI	GCTCC	2 cut(s)	375, 814
Lsp1109I	GCAGC	1 cut(s)	673
LweI	GCATC	2 cut(s)	388, 695
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	154, 847
MalI	GATC	2 cut(s)	198, 428
MboI	GATC	2 cut(s)	196, 426
MboII	GAAGA	3 cut(s)	722, 880, 939
MhlI	GDGCHC	2 cut(s)	372, 409
MluI	ACGCGT	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	247, 285, 738, 1002
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	15, 20, 69, 287, 815
MslI	CAYNNNNRTG	4 cut(s)	306, 363, 415, 568
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	806, 875
MvaI	CCWGG	2 cut(s)	806, 875
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	255, 695, 800, 868
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	2 cut(s)	196, 426
NlaIII	CATG	5 cut(s)	140, 235, 311, 769, 803
NlaIV	GGNNCC	3 cut(s)	226, 726, 810
NmuCI	GTSAC	2 cut(s)	154, 847
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	1001
PkrI	GCNGC	1 cut(s)	688
PshBI	ATTAAT	2 cut(s)	20, 815
PsiI	TTATAA	1 cut(s)	939
Psp6I	CCWGG	2 cut(s)	804, 873
PspEI	GGTNACC	1 cut(s)	847
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	804, 873
PspN4I	GGNNCC	3 cut(s)	226, 726, 810
PstI	CTGCAG	2 cut(s)	700, 796
PstNI	CAGNNNCTG	1 cut(s)	791
RsaI	GTAC	3 cut(s)	390, 437, 562
RsaNI	GTAC	3 cut(s)	389, 436, 561
RseI	CAYNNNNRTG	4 cut(s)	306, 363, 415, 568
SaqAI	TTAA	5 cut(s)	15, 20, 69, 287, 815
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	2 cut(s)	196, 426
ScrFI	CCNGG	2 cut(s)	806, 875
SduI	GDGCHC	2 cut(s)	372, 409
SetI	ASST	6 cut(s)	196, 293, 390, 498, 834, 846
SfaNI	GCATC	2 cut(s)	388, 695
SfcI	CTRYAG	2 cut(s)	696, 792
SmiMI	CAYNNNNRTG	4 cut(s)	306, 363, 415, 568
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SsiI	CCGC	2 cut(s)	373, 401
SspI	AATATT	4 cut(s)	24, 285, 452, 601
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	2 cut(s)	804, 873
TaaI	ACNGT	7 cut(s)	13, 433, 440, 595, 787, 853, 929
TaiI	ACGT	1 cut(s)	390
TaqII	GACCGA	3 cut(s)	327, 479, 809
TatI	WGTACW	2 cut(s)	435, 560
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	5 cut(s)	15, 20, 69, 287, 815
Tru9I	TTAA	5 cut(s)	15, 20, 69, 287, 815
TscAI	CASTG	3 cut(s)	436, 551, 792
TseFI	GTSAC	2 cut(s)	154, 847
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	2 cut(s)	154, 847
TspDTI	ATGAA	5 cut(s)	19, 153, 248, 461, 788
TspRI	CASTG	3 cut(s)	436, 551, 792
Van91I	CCANNNNNTGG	1 cut(s)	1001
VneI	GTGCAC	1 cut(s)	405
VspI	ATTAAT	2 cut(s)	20, 815
XapI	RAATTY	2 cut(s)	182, 957
XmiI	GTMKAC	1 cut(s)	823
XspI	CTAG	1 cut(s)	743
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.