pycom01g03250

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
2551210 .. 2552968
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1260 bp
ATGATAACAAAGGATTTATTTATTACCTATCCTCTAAATATGATTTTACAAAAGAATAGTTCTATTTACAAACCCATTTTTACTTCCAACACAGCCTTATTAATTTTCTATCAGTTCGATCATCTCCAACTCATTCGATTCGAACAACCGAAAATTGAGAAGGAAAACCTTCCTGGGCTACAACCCACCTTAGCTTTGAGGGTGGCTACGCTATTGGTGATTGTTATGCTACTTTCCTTGCCATTTGTCACTTCTCTCTGCCTTTGTAAGTTTAATCTATTTTGCTTAATATTCATTTTCAATTACCAAAACAAGATTAAAAGTTTCTATTTTTTTTTCCCTGCTCATTTTCGTTTTACTTGTCAATTACTACTGTTTTTGTTTGCAGAACCCATTTTTCCGACTGTAAGATCAAATCAAATTGTCAAATGTGTATTGGCACTAAGCCAAATATCTGACCATAGTGAGTCCCTAAGATTTAACGTTTTAGTCATTGCAGCACCCGATTTACAGCAACTGTGTTTTCCGATGGCATTGACTTTGAGCACCCGAAGAGCCTTTTCATCTTTTCTTTCGAATGAGTGCCAAGGAATTACGACTTTCTTTGACGATCGAGAGCTTGAAGAAGGAACAAGTATTCCTCTTGAGCTCCCAAGTGCGATCAAAGAATCGAATATTGCAATCATTCTTCTCTTGCCAAACTATGCTTCTTCCAAATGGTGCTTGGACGAACTCACAACCATTCTGCAATGCATGGAAGGCAGGAACTCAGTTCTGCCGGTCTTTTATGAGACAGATCCATCTGAGGTTGAAAATCAACTAGATGTTTTGCTAAAGTCTTCGCAGAGCATGAAGAAAAGTTCATCACTACCGAAGACAAAAAGAAGTGCTGGATCTCATAATGGAGTCAAACGGGAATGCTTTGTTTATCTTCGATTGATTGGGTATTTTACTTTTCTTCCTTGTAGATCTGGAAGAGAGCTGATTAATGACATCGTCAAATGCGTGTGGAGGAAAGTGCAAGCTACATTCACGCTATCAGATTCCTCATGGAAGTTAGTCGGAACTGATTATGCACTCAAGCAACTAAGCTTGCTGTTACCTCAATATGCCAATGATACAACCCTTGCTAAGCTAGTTTATGACGAAATCGGCCATCATTTTGAAATTCATTGTTTTATTGCAAATAGGGATTTTACCATCTACAAAAATAGGGATAAAATACTTAAAAATACTTGCAAGAGTACAAGGTTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

48.13

Weight (kDa)

8.74

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 175 - 344 9.1e-26 TIR domain
TIR_2 PF13676 196 - 267 2.4e-11 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 483
AclWI GGATC 2 cut(s) 791, 901
AcoI YGGCCR 1 cut(s) 1153
AcsI RAATTY 1 cut(s) 1167
AfaI GTAC 1 cut(s) 1246
AgsI TTSAA 4 cut(s) 301, 623, 812, 1166
AjnI CCWGG 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 691, 723
AloI GAACNNNNNNTCC 2 cut(s) 622, 654
AluBI AGCT 7 cut(s) 194, 619, 649, 982, 1025, 1092, 1135
AluI AGCT 7 cut(s) 194, 619, 649, 982, 1025, 1092, 1135
Alw21I GWGCWC 2 cut(s) 548, 651
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 2 cut(s) 791, 901
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 1 cut(s) 1153
ApeKI GCWGC 1 cut(s) 497
ApoI RAATTY 1 cut(s) 1167
AseI ATTAAT 2 cut(s) 101, 987
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 2 cut(s) 141, 575
BanII GRGCYC 1 cut(s) 651
BbsI GAAGAC 2 cut(s) 831, 881
Bbv12I GWGCWC 2 cut(s) 548, 651
BbvI GCAGC 1 cut(s) 509
BccI CCATC 4 cut(s) 523, 808, 1164, 1208
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 2 cut(s) 821, 1136
BglII AGATCT 1 cut(s) 968
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 1131
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
BpiI GAAGAC 2 cut(s) 831, 881
Bpu10I CCTNAGC 1 cut(s) 190
Bpu1102I GCTNAGC 1 cut(s) 1131
Bpu14I TTCGAA 2 cut(s) 141, 575
BpuEI CTTGAG 2 cut(s) 665, 1064
BsaJI CCNNGG 2 cut(s) 173, 586
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 2 cut(s) 492, 755
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 173, 586
BseMI GCAATG 2 cut(s) 492, 755
BseMII CTCAG 2 cut(s) 783, 795
BseXI GCAGC 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 613
BshFI GGCC 1 cut(s) 1155
BsiEI CGRYCG 1 cut(s) 613
BsiHKAI GWGCWC 2 cut(s) 548, 651
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 785
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 1 cut(s) 1155
Bsp119I TTCGAA 2 cut(s) 141, 575
Bsp1286I GDGCHC 2 cut(s) 548, 651
Bsp143I GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
Bsp1720I GCTNAGC 1 cut(s) 1131
BspANI GGCC 1 cut(s) 1155
BspCNI CTCAG 2 cut(s) 782, 796
BspPI GGATC 2 cut(s) 791, 901
BspQI GCTCTTC 1 cut(s) 547
BspT104I TTCGAA 2 cut(s) 141, 575
BsrDI GCAATG 2 cut(s) 492, 755
BsrFI RCCGGY 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 2 cut(s) 173, 586
BssMI GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
BssT1I CCWWGG 1 cut(s) 586
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 375, 406, 519
Bst6I CTCTTC 2 cut(s) 547, 970
BstBI TTCGAA 2 cut(s) 141, 575
BstC8I GCNNGC 2 cut(s) 1023, 1094
BstDEI CTNAG 7 cut(s) 190, 443, 473, 769, 804, 1088, 1131
BstKTI GATC 7 cut(s) 121, 413, 613, 663, 799, 896, 971
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 1 cut(s) 759
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 509
BstV2I GAAGAC 2 cut(s) 831, 881
BstX2I RGATCY 3 cut(s) 796, 893, 968
BstYI RGATCY 3 cut(s) 796, 893, 968
BsuRI GGCC 1 cut(s) 1155
Cac8I GCNNGC 2 cut(s) 1023, 1094
CaiI CAGNNNCTG 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 778
Csp6I GTAC 1 cut(s) 1245
CviAII CATG 3 cut(s) 754, 850, 1050
CviQI GTAC 1 cut(s) 1245
DdeI CTNAG 7 cut(s) 190, 443, 473, 769, 804, 1088, 1131
DpnI GATC 7 cut(s) 120, 412, 612, 662, 798, 895, 970
DpnII GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
EaeI YGGCCR 1 cut(s) 1153
Eam1104I CTCTTC 2 cut(s) 547, 970
EarI CTCTTC 2 cut(s) 547, 970
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 586
EcoT22I ATGCAT 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 586
FaeI CATG 3 cut(s) 757, 853, 1053
FaqI GGGAC 1 cut(s) 454
FatI CATG 3 cut(s) 753, 849, 1049
Fnu4HI GCNGC 1 cut(s) 498
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 2 cut(s) 821, 1136
GluI GCNGC 1 cut(s) 498
HaeIII GGCC 1 cut(s) 1155
HapII CCGG 1 cut(s) 779
Hin1II CATG 3 cut(s) 757, 853, 1053
HindIII AAGCTT 1 cut(s) 1090
HinfI GANTC 5 cut(s) 138, 467, 668, 906, 1043
HpaII CCGG 1 cut(s) 779
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 6 cut(s) 402, 457, 528, 805, 1042, 1064
Hpy188III TCNNGA 3 cut(s) 614, 644, 972
HpyAV CCTTC 4 cut(s) 154, 179, 620, 752
HpyCH4III ACNGT 3 cut(s) 375, 406, 519
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 9 cut(s) 386, 497, 680, 748, 753, 1021, 1076, 1184, 1239
HpyF10VI GCNNNNNNNGC 1 cut(s) 759
HpyF3I CTNAG 7 cut(s) 190, 443, 473, 769, 804, 1088, 1131
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 3 cut(s) 757, 853, 1053
Kzo9I GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 1 cut(s) 654
LpnPI CCDG 7 cut(s) 159, 186, 354, 748, 792, 876, 957
Lsp1109I GCAGC 1 cut(s) 509
MaeI CTAG 2 cut(s) 821, 1136
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 247, 1098
MalI GATC 7 cut(s) 120, 412, 612, 662, 798, 895, 970
MboI GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
MflI RGATCY 3 cut(s) 796, 893, 968
MhlI GDGCHC 2 cut(s) 548, 651
MluCI AATT 7 cut(s) 102, 153, 301, 365, 420, 591, 1167
MlyI GAGTC 2 cut(s) 476, 915
MmeI TCCRAC 4 cut(s) 111, 151, 425, 1042
MnlI CCTC 7 cut(s) 42, 192, 651, 799, 1005, 1057, 1113
Mph1103I ATGCAT 1 cut(s) 755
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 7 cut(s) 101, 273, 287, 318, 480, 987, 1227
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 759
NdeII GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
NlaIII CATG 3 cut(s) 757, 853, 1053
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 755
NspV TTCGAA 2 cut(s) 141, 575
PciSI GCTCTTC 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 1002
PctI GAATGC 1 cut(s) 923
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 138, 668, 1043
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 1 cut(s) 499
Ple19I CGATCG 1 cut(s) 613
PleI GAGTC 2 cut(s) 475, 914
PpsI GAGTC 2 cut(s) 475, 914
PshBI ATTAAT 2 cut(s) 101, 987
Psp124BI GAGCTC 1 cut(s) 651
Psp1406I AACGTT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 517
PsuI RGATCY 3 cut(s) 796, 893, 968
PsyI GACNNNGTC 1 cut(s) 995
PvuI CGATCG 1 cut(s) 613
RsaI GTAC 1 cut(s) 1246
RsaNI GTAC 1 cut(s) 1245
SacI GAGCTC 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 7 cut(s) 101, 273, 287, 318, 480, 987, 1227
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 7 cut(s) 118, 410, 610, 660, 796, 893, 968
SchI GAGTC 2 cut(s) 476, 915
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 548, 651
SfuI TTCGAA 2 cut(s) 141, 575
SmlI CTYRAG 2 cut(s) 644, 1079
SmoI CTYRAG 2 cut(s) 644, 1079
Sse9I AATT 7 cut(s) 102, 153, 301, 365, 420, 591, 1167
SspI AATATT 2 cut(s) 291, 676
SspMI CTAG 2 cut(s) 821, 1136
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 3 cut(s) 375, 406, 519
TaiI ACGT 1 cut(s) 486
TaqI TCGA 7 cut(s) 117, 136, 141, 575, 613, 671, 934
TasI AATT 7 cut(s) 102, 153, 301, 365, 420, 591, 1167
TatI WGTACW 1 cut(s) 1244
TfiI GAWTC 3 cut(s) 138, 668, 1043
Tru1I TTAA 7 cut(s) 101, 273, 287, 318, 480, 987, 1227
Tru9I TTAA 7 cut(s) 101, 273, 287, 318, 480, 987, 1227
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 5 cut(s) 283, 552, 852, 866, 1160
Tth111I GACNNNGTC 1 cut(s) 995
VspI ATTAAT 2 cut(s) 101, 987
XapI RAATTY 1 cut(s) 1167
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 2 cut(s) 821, 1136
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.