Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2642669 .. 2643166

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTATTTCTGTCAAACAAAGTTCATCCAGCATTTGTAAGGGAAAGATGTGCAATGAAGAGAGAATATGAAGAATTTAAAGTTAGAATCAATCGTTTGGTGGCCATGGCACAAAAACTTCCCGAGGATGGCTGGACAATGCAGGATGGGACCCCCTGGCCAGGGAGTAATGTACGAGACCATCCTGTACAATGTACACTCAACAACATGAGGCTTTTGTCTTTCACACTGTTTCTTCTTTGTAGAATTGTTAGTTCCACAATAATTATTCTCATGAATTTTATCAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

98

Amino Acids

11.39

Weight (kDa)

9.64

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	3 - 63	4.3e-25	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	102, 158
AcsI	RAATTY	2 cut(s)	74, 277
AfaI	GTAC	3 cut(s)	174, 189, 196
AfiI	CCNNNNNNNGG	3 cut(s)	128, 161, 162
AjnI	CCWGG	2 cut(s)	155, 160
Alw26I	GTCTC	1 cut(s)	171
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	2 cut(s)	102, 158
ApoI	RAATTY	2 cut(s)	74, 277
AspS9I	GGNCC	1 cut(s)	150
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	150
BalI	TGGCCA	2 cut(s)	104, 160
BccI	CCATC	3 cut(s)	122, 140, 189
BciT130I	CCWGG	2 cut(s)	157, 162
BcoDI	GTCTC	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	157, 162
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	151, 152
BmrFI	CCNGG	2 cut(s)	157, 162
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	105, 123, 155, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 161, 162
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	157, 162
BseDI	CCNNGG	4 cut(s)	105, 123, 155, 161
BseGI	GGATG	4 cut(s)	25, 133, 151, 181
BseLI	CCNNNNNNNGG	3 cut(s)	128, 161, 162
BseMI	GCAATG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	104, 160
BsiHKCI	CYCGRG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	3 cut(s)	128, 161, 162
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	104, 160
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	122
Bsp1407I	TGTACA	2 cut(s)	187, 194
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	2 cut(s)	104, 160
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	151, 152
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	60
BsrGI	TGTACA	2 cut(s)	187, 194
BssECI	CCNNGG	4 cut(s)	105, 123, 155, 161
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	157, 162
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	53
BstAUI	TGTACA	2 cut(s)	187, 194
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	4 cut(s)	25, 133, 151, 181
BstMAI	GTCTC	1 cut(s)	171
BstNI	CCWGG	2 cut(s)	157, 162
BstSCI	CCNGG	2 cut(s)	155, 160
BsuRI	GGCC	2 cut(s)	104, 160
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	4 cut(s)	25, 133, 151, 181
BtsIMutI	CAGTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	173, 188, 195
CviAII	CATG	3 cut(s)	106, 208, 274
CviJI	RGCY	4 cut(s)	104, 132, 160, 214
CviKI_1	RGCY	4 cut(s)	104, 132, 160, 214
CviQI	GTAC	3 cut(s)	173, 188, 195
DraI	TTTAAA	1 cut(s)	79
EaeI	YGGCCR	2 cut(s)	102, 158
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	155, 160
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	109, 211, 277
FaiI	YATR	4 cut(s)	69, 107, 209, 275
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	105, 207, 273
FokI	GGATG	4 cut(s)	12, 140, 158, 168
HaeIII	GGCC	2 cut(s)	104, 160
Hin1II	CATG	3 cut(s)	109, 211, 277
HinfI	GANTC	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	122, 274
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	53, 142
Hsp92II	CATG	3 cut(s)	109, 211, 277
KflI	GGGWCCC	1 cut(s)	150
LpnPI	CCDG	8 cut(s)	42, 118, 128, 142, 147, 169, 174, 198
MboII	GAAGA	3 cut(s)	70, 83, 227
MlsI	TGGCCA	2 cut(s)	104, 160
MluCI	AATT	4 cut(s)	74, 246, 264, 277
MluNI	TGGCCA	2 cut(s)	104, 160
MnlI	CCTC	2 cut(s)	118, 204
Mox20I	TGGCCA	2 cut(s)	104, 160
MscI	TGGCCA	2 cut(s)	104, 160
MseI	TTAA	1 cut(s)	78
Msp20I	TGGCCA	2 cut(s)	104, 160
MspR9I	CCNGG	2 cut(s)	157, 162
MvaI	CCWGG	2 cut(s)	157, 162
NcoI	CCATGG	1 cut(s)	105
NlaIII	CATG	3 cut(s)	109, 211, 277
NlaIV	GGNNCC	2 cut(s)	151, 152
PagI	TCATGA	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	87
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	155, 160
PspGI	CCWGG	2 cut(s)	155, 160
PspN4I	GGNNCC	2 cut(s)	151, 152
PspPI	GGNCC	1 cut(s)	150
PspPPI	RGGWCCY	1 cut(s)	150
RsaI	GTAC	3 cut(s)	174, 189, 196
RsaNI	GTAC	3 cut(s)	173, 188, 195
SaqAI	TTAA	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	157, 162
SinI	GGWCC	1 cut(s)	150
Sse9I	AATT	4 cut(s)	74, 246, 264, 277
StyD4I	CCNGG	2 cut(s)	155, 160
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	231
TasI	AATT	4 cut(s)	74, 246, 264, 277
TatI	WGTACW	2 cut(s)	187, 194
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	234
TspDTI	ATGAA	4 cut(s)	14, 71, 84, 290
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	2 cut(s)	74, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.