Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2643210 .. 2644066

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTTATATATAACCATACACATATACACAAGATATCAAGAGCTTACACAAATTTGAGCTTCTTGTGCATTTTCAGTGTGTCTTTGTACATTTTATTAGTTTTTAGGTCTTTGGCGTTTTTGGTGACCTTACAGGTCTTTCTTGGTAACAATGGTGTTCATGATGTTGAAGGATATGAGTTACCTCGTCTAGTTTATGTTTCTCGTGAAAAGAGACCAGGGTTTGATCACCATAAAAAGGCCGGTGCCATGAATGCTTTGGTAAGCCTTAAAGTTCATGTTTGTGTTGCTTACAGTAGGCTACTTTTCCTTTTCTTCCCCTCTTTGTTTTTTTTTATTTTTTTAAAAAAATATATTTATTTGAAGATTCAGGTCTCAGCAATTATCTCAAATGCTCCTTATCTTCTGAATGTTGACTGTGATCACTACATCAACAATAGCAAGGCAATCAGAGAAGCCATGTGTTTCATGATGGACCCTACATCAGGGAAGAAAGTTTGCTATGTGCAGTTCCCTCAAAGATTTGATGGGATTGATCGTCATGATAGACACTCCAACCGGAATGTTGTATTCTTTGATGGACATCAACATGAAAGGGTTAGATGGTATACAAGGACCAATATATGCTGGAACTGGGTGTGTTTTCAGAAGGCAAGCACTTTATGGATACGATGCTCCTACCAAACAGAAACCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

233

Amino Acids

27.38

Weight (kDa)

9.42

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	44 - 90	6.5e-19	Cellulose synthase
Cellulose_synt	PF03552	123 - 194	4.7e-40	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	238, 485
AgsI	TTSAA	2 cut(s)	170, 364
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	44, 60
AluI	AGCT	2 cut(s)	44, 60
Alw26I	GTCTC	2 cut(s)	208, 379
AoxI	GGCC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	475, 615
AsuHPI	GGTGA	2 cut(s)	136, 221
AvaII	GGWCC	2 cut(s)	475, 615
BanI	GGYRCC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	204
BccI	CCATC	4 cut(s)	466, 521, 572, 597
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	660
BclI	TGATCA	2 cut(s)	226, 421
BcoDI	GTCTC	2 cut(s)	208, 379
BfaI	CTAG	2 cut(s)	191, 697
BfuI	GTATCC	1 cut(s)	660
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	475, 615
BmgT120I	GGNCC	2 cut(s)	475, 615
BmiI	GGNNCC	2 cut(s)	247, 477
BmrFI	CCNGG	1 cut(s)	219
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	1 cut(s)	662
BmuI	ACTGGG	1 cut(s)	643
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	2 cut(s)	208, 379
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 485
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	638
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	218
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	238, 485
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	243, 559
BslI	CCNNNNNNNGG	2 cut(s)	238, 485
BsmAI	GTCTC	2 cut(s)	208, 379
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	242
Bso31I	GGTCTC	2 cut(s)	208, 379
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	226, 421, 535
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	389
BspHI	TCATGA	3 cut(s)	160, 468, 541
BspLI	GGNNCC	2 cut(s)	247, 477
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	2 cut(s)	208, 379
BsrFI	RCCGGY	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	3 cut(s)	226, 421, 535
BssNAI	GTATAC	1 cut(s)	609
BssSI	CACGAG	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	296, 419
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	1 cut(s)	376
BstEII	GGTNACC	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstKTI	GATC	3 cut(s)	229, 424, 538
BstMAI	GTCTC	2 cut(s)	208, 379
BstMBI	GATC	3 cut(s)	226, 421, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 254
BstNI	CCWGG	1 cut(s)	219
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	217
BstZ17I	GTATAC	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	655
CciI	TCATGA	3 cut(s)	160, 468, 541
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	475, 615
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	7 cut(s)	161, 250, 278, 460, 469, 542, 590
CviJI	RGCY	6 cut(s)	44, 60, 242, 267, 301, 458
CviKI_1	RGCY	6 cut(s)	44, 60, 242, 267, 301, 458
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	3 cut(s)	228, 423, 537
DpnII	GATC	3 cut(s)	226, 421, 535
DraI	TTTAAA	1 cut(s)	345
Eco31I	GGTCTC	2 cut(s)	208, 379
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	475, 615
Eco91I	GGTNACC	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO65I	GGTNACC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	36
FaeI	CATG	7 cut(s)	164, 253, 281, 463, 472, 545, 593
FatI	CATG	7 cut(s)	160, 249, 277, 459, 468, 541, 589
FbaI	TGATCA	2 cut(s)	226, 421
FblI	GTMKAC	1 cut(s)	608
FspBI	CTAG	2 cut(s)	191, 697
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	2 cut(s)	243, 559
Hin1II	CATG	7 cut(s)	164, 253, 281, 463, 472, 545, 593
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	243, 559
HphI	GGTGA	2 cut(s)	136, 221
Hpy166II	GTNNAC	2 cut(s)	415, 609
Hpy188I	TCNGA	3 cut(s)	408, 452, 648
Hpy188III	TCNNGA	5 cut(s)	39, 161, 206, 469, 542
Hpy8I	GTNNAC	2 cut(s)	415, 609
HpyAV	CCTTC	2 cut(s)	164, 643
HpyCH4III	ACNGT	2 cut(s)	296, 419
HpyCH4V	TGCA	2 cut(s)	69, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 254
HpyF3I	CTNAG	1 cut(s)	376
Hsp92II	CATG	7 cut(s)	164, 253, 281, 463, 472, 545, 593
Ksp22I	TGATCA	2 cut(s)	226, 421
Kzo9I	GATC	3 cut(s)	226, 421, 535
LmnI	GCTCC	2 cut(s)	400, 680
LpnPI	CCDG	9 cut(s)	119, 204, 231, 256, 356, 471, 572, 613, 619
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	2 cut(s)	191, 697
MaeIII	GTNAC	3 cut(s)	124, 146, 180
MalI	GATC	3 cut(s)	228, 423, 537
MboI	GATC	3 cut(s)	226, 421, 535
MboII	GAAGA	4 cut(s)	307, 376, 395, 502
MluCI	AATT	2 cut(s)	52, 381
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	3 cut(s)	195, 331, 525
MseI	TTAA	2 cut(s)	270, 344
MslI	CAYNNNNRTG	2 cut(s)	282, 588
MspI	CCGG	2 cut(s)	243, 559
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	66, 254
NdeII	GATC	3 cut(s)	226, 421, 535
NlaIII	CATG	7 cut(s)	164, 253, 281, 463, 472, 545, 593
NlaIV	GGNNCC	2 cut(s)	247, 477
NmuCI	GTSAC	1 cut(s)	124
PagI	TCATGA	3 cut(s)	160, 468, 541
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	217
PspEI	GGTNACC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	247, 477
PspPI	GGNCC	2 cut(s)	475, 615
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	2 cut(s)	282, 588
SaqAI	TTAA	2 cut(s)	270, 344
Sau3AI	GATC	3 cut(s)	226, 421, 535
Sau96I	GGNCC	2 cut(s)	475, 615
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	7 cut(s)	46, 62, 110, 131, 138, 187, 375
SfaNI	GCATC	1 cut(s)	662
SinI	GGWCC	2 cut(s)	475, 615
SmiMI	CAYNNNNRTG	2 cut(s)	282, 588
Sse9I	AATT	2 cut(s)	52, 381
SspMI	CTAG	2 cut(s)	191, 697
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	296, 419
TasI	AATT	2 cut(s)	52, 381
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	270, 344
Tru9I	TTAA	2 cut(s)	270, 344
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	149, 266, 266, 457, 606
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	475, 615
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	608
XspI	CTAG	2 cut(s)	191, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.