Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2644558 .. 2645049

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCCCAGCTGAAGTTGGAGAAGAAATTTGGGCAGTCTCCAGTTTTTGTAGCCTCTGCAGTTTTGGAAAATGGTGGAATACTGGAGGATTTCAGCTCTGCATTGCTCTTGAAAGAAGTCATCCAAGTCATAAACTGTGGTTATGAAGATAAAACAGAATGGGGAAAGGAAGTTGGCTGGATATATGGTTCTGTTACTGAGGATATTCTGACAGGATTTAAGATGCACTGCCATGGATGGCGGTCTGTCTACTGCATACCCAAACTTCCAGCATTCAAAGCTCCTATTAACCTCAGTGATTGTTTAAATCAAGTTCTACGGTGGGCCCTTGGATCGGTTGATCGATCTTCCTTAGTAGACATTGCCCAATCTGGTATGGATATGGGAGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

132

Amino Acids

14.47

Weight (kDa)

5.12

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 114	1.4e-55	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	249, 357
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	112, 277
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AluBI	AGCT	3 cut(s)	10, 96, 281
AluI	AGCT	3 cut(s)	10, 96, 281
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	324
ApaI	GGGCCC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	324, 325
BaeGI	GKGCMC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	328
BccI	CCATC	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	324, 325
BmiI	GGNNCC	1 cut(s)	326
BmsI	GCATC	1 cut(s)	213
BpmI	CTGGAG	2 cut(s)	24, 104
Bsa29I	ATCGAT	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	232, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	41, 87
Bse3DI	GCAATG	2 cut(s)	101, 360
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	232, 328
BseGI	GGATG	2 cut(s)	120, 242
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	2 cut(s)	101, 360
BseMII	CTCAG	2 cut(s)	189, 307
BseNI	ACTGG	2 cut(s)	41, 87
BseSI	GKGCMC	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	326
Bsp120I	GGGCCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	332, 340, 344
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	190, 306
BspDI	ATCGAT	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	326
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	2 cut(s)	101, 360
BsrI	ACTGG	2 cut(s)	41, 87
BssECI	CCNNGG	2 cut(s)	232, 328
BssMI	GATC	3 cut(s)	332, 340, 344
BssT1I	CCWWGG	2 cut(s)	232, 328
Bst4CI	ACNGT	2 cut(s)	137, 321
BstDEI	CTNAG	3 cut(s)	198, 293, 352
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	120, 242
BstKTI	GATC	3 cut(s)	335, 343, 347
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	332, 340, 344
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	326
BsuTUI	ATCGAT	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	120, 242
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	226, 301
Cfr13I	GGNCC	2 cut(s)	324, 325
ClaI	ATCGAT	1 cut(s)	343
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	6 cut(s)	10, 53, 96, 177, 281, 326
CviKI_1	RGCY	6 cut(s)	10, 53, 96, 177, 281, 326
DdeI	CTNAG	3 cut(s)	198, 293, 352
DpnI	GATC	3 cut(s)	334, 342, 346
DpnII	GATC	3 cut(s)	332, 340, 344
DraI	TTTAAA	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	232, 328
Eco24I	GRGCYC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	232, 328
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	2 cut(s)	232, 328
FaeI	CATG	1 cut(s)	236
FaiI	YATR	8 cut(s)	131, 144, 184, 186, 234, 257, 377, 383
FatI	CATG	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	249, 357
FokI	GGATG	2 cut(s)	107, 249
FriOI	GRGCYC	1 cut(s)	328
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	2 cut(s)	24, 104
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	250, 358
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	250, 358
HpyCH4III	ACNGT	2 cut(s)	137, 321
HpyCH4V	TGCA	4 cut(s)	59, 101, 226, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	198, 293, 352
Hsp92II	CATG	1 cut(s)	236
Kzo9I	GATC	3 cut(s)	332, 340, 344
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	20, 54, 68, 163, 198, 282, 357
LweI	GCATC	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	334, 342, 346
MboI	GATC	3 cut(s)	332, 340, 344
MboII	GAAGA	3 cut(s)	34, 158, 339
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	1 cut(s)	26
MnlI	CCTC	4 cut(s)	64, 79, 193, 302
MseI	TTAA	3 cut(s)	219, 288, 305
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	3 cut(s)	332, 340, 344
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	326
PspOMI	GGGCCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	324, 325
PstI	CTGCAG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	219, 288, 305
Sau3AI	GATC	3 cut(s)	332, 340, 344
Sau96I	GGNCC	2 cut(s)	324, 325
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	4 cut(s)	12, 98, 283, 294
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	232, 328
TaaI	ACNGT	2 cut(s)	137, 321
TaqI	TCGA	1 cut(s)	343
TasI	AATT	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	219, 288, 305
Tru9I	TTAA	3 cut(s)	219, 288, 305
TscAI	CASTG	2 cut(s)	233, 301
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	233, 301
XapI	RAATTY	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	249, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.