pycom01g03480

Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
2646027 .. 2646236
210 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGATTCATGGTGTCCGTTGTTGGGTCGGCTATTTTTTTACCTTCTGGGTCATTGTGCATCTCTACCCCTTCCTCAAGGGATTGCTGGGTAAACAAGATAGGATGCCCACAATCAATATTAACTCTTATGTGGGTTCGAATCAATCCCCTTGTGTCAAAAGATGGCCCCGGATTGGAGGTTTGCGGGTTAAATTGCGATTGGATACGTGA

Protein Analysis

70

Amino Acids

8.08

Weight (kDa)

10.38

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cellulose_synt PF03552 10 - 40 1.4e-11 Cellulose synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 22, 173
AoxI GGCC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 169
AsuII TTCGAA 1 cut(s) 137
BccI CCATC 1 cut(s) 156
BciVI GTATCC 1 cut(s) 196
BcnI CCSGG 1 cut(s) 169
BfuI GTATCC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 2 cut(s) 67, 93
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 173
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 22, 173
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 22, 173
BsnI GGCC 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 137
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 137
BstF5I GGATG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 167
BsuI GTATCC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 165
CviAII CATG 1 cut(s) 8
CviJI RGCY 2 cut(s) 30, 166
CviKI_1 RGCY 2 cut(s) 30, 166
FaeI CATG 1 cut(s) 11
FaiI YATR 2 cut(s) 9, 129
FatI CATG 1 cut(s) 7
FauI CCCGC 1 cut(s) 177
FokI GGATG 1 cut(s) 115
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 169
Hin1II CATG 1 cut(s) 11
HinfI GANTC 2 cut(s) 4, 139
HpaII CCGG 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 52, 79
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 1 cut(s) 11
LpnPI CCDG 3 cut(s) 31, 71, 182
LweI GCATC 2 cut(s) 67, 93
MaeII ACGT 1 cut(s) 206
MluCI AATT 1 cut(s) 191
MnlI CCTC 2 cut(s) 83, 170
MseI TTAA 2 cut(s) 120, 189
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 169
NciI CCSGG 1 cut(s) 169
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 167
NspV TTCGAA 1 cut(s) 137
PfeI GAWTC 2 cut(s) 4, 139
Ppu21I YACGTR 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 120, 189
Sau96I GGNCC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 169
SetI ASST 3 cut(s) 44, 181, 209
SfaNI GCATC 2 cut(s) 67, 93
SfuI TTCGAA 1 cut(s) 137
SgeI CNNG 9 cut(s) 20, 58, 88, 98, 107, 162, 180, 181, 197
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 191
SsiI CCGC 1 cut(s) 184
SspI AATATT 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 167
TaiI ACGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 191
TfiI GAWTC 2 cut(s) 4, 139
Tru1I TTAA 2 cut(s) 120, 189
Tru9I TTAA 2 cut(s) 120, 189
TspGWI ACGGA 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.