Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3043025 .. 3043910

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAAAGAAAAGATTAGTAACCTAAATCTCAATGAAGCCAAAATGAAGTTGCAGTCCTTGAAGATGAAGAACTATTTACATCAACAACCGAAGCCAGCAATTTTAAACAATTTTAACTCAAATGAAGAATGCACTTATAAACTAAACCTATGTGTTATCACCAAAGAGGAAAGTCTGATTTTAGACTTGATCAATAGGCTAGAAGATCCTCTAGAAAAGGTTCTAAAAATTCTTGAACTCAACGGTTTAGATGATGAGGAAATAGCAGAAGCCGCATCATCTCAGCATCATATGGATGAAAACTTTGGAAATGATAACGAAGACAACTGTTATGAAATCTTTGAAAAAAGGGAAAATGTTAAAGAAAAGAAAAGATGCTATCTAATATCTAGACGTTTTGTCGATGTGTTCGTTTTTTGGAATCTTTATGTGCAACGACGTGAAGCTGAGTCAGAACCAGTAAAGATGCCGTCCAATGTGCAAGGCTGCTTTATGGTGCCCCTCTTCCACTTTGTAAAATACTCTTTTCAGTGCTTAAGAAACCTACAATATCGTAGCCGCTCATGGTTACTTTGGCACTCAAATTTTAATCATAGTATTATTATCTTTTATACATATATTATTTGCTTGTTTATAAATTCAATTATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

25.95

Weight (kDa)

6.32

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	138, 635, 647
AccB1I	GGYRCC	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	561
AciI	CCGC	2 cut(s)	273, 559
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	228, 583, 637
AflII	CTTAAG	1 cut(s)	535
AgsI	TTSAA	4 cut(s)	61, 236, 344, 642
AhdI	GACNNNNNGTC	1 cut(s)	398
AjiI	CACGTC	1 cut(s)	440
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
AlwI	GGATC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	486
ApoI	RAATTY	3 cut(s)	228, 583, 637
Asp700I	GAANNNNTTC	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	189
BfaI	CTAG	3 cut(s)	200, 212, 390
BfrI	CTTAAG	1 cut(s)	535
BisI	GCNGC	3 cut(s)	273, 487, 559
BlsI	GCNGC	3 cut(s)	274, 488, 560
BmeRI	GACNNNNNGTC	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	498
BmsI	GCATC	4 cut(s)	284, 295, 365, 456
BpiI	GAAGAC	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	296, 438
BseNI	ACTGG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	189, 205
BspACI	CCGC	2 cut(s)	273, 559
BspCNI	CTCAG	2 cut(s)	295, 439
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	496
BspTI	CTTAAG	1 cut(s)	535
BsrBI	CCGCTC	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	189, 205
Bst4CI	ACNGT	2 cut(s)	245, 329
Bst6I	CTCTTC	1 cut(s)	509
BstAFI	CTTAAG	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	282, 447
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	192, 208
BstMBI	GATC	2 cut(s)	189, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	96
CviAII	CATG	1 cut(s)	564
CviJI	RGCY	7 cut(s)	38, 94, 199, 272, 446, 486, 558
CviKI_1	RGCY	7 cut(s)	38, 94, 199, 272, 446, 486, 558
DdeI	CTNAG	2 cut(s)	282, 447
DpnI	GATC	2 cut(s)	191, 207
DpnII	GATC	2 cut(s)	189, 205
DraI	TTTAAA	1 cut(s)	105
DriI	GACNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	509
Eam1105I	GACNNNNNGTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	509
FaeI	CATG	1 cut(s)	567
FatI	CATG	1 cut(s)	563
FauNDI	CATATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	273, 487, 559
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	273, 487, 559
FspBI	CTAG	3 cut(s)	200, 212, 390
GluI	GCNGC	3 cut(s)	273, 487, 559
Hin1II	CATG	1 cut(s)	567
HinfI	GANTC	2 cut(s)	421, 449
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	177, 454
Hpy188III	TCNNGA	3 cut(s)	212, 233, 390
Hpy99I	CGWCG	1 cut(s)	441
HpyCH4III	ACNGT	2 cut(s)	245, 329
HpyCH4IV	ACGT	2 cut(s)	394, 439
HpyCH4V	TGCA	4 cut(s)	52, 132, 433, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	282, 447
HpySE526I	ACGT	2 cut(s)	394, 439
Hsp92II	CATG	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	189, 205
LpnPI	CCDG	2 cut(s)	108, 471
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	4 cut(s)	284, 295, 365, 456
MaeI	CTAG	3 cut(s)	200, 212, 390
MaeII	ACGT	2 cut(s)	394, 439
MaeIII	GTNAC	2 cut(s)	17, 567
MalI	GATC	2 cut(s)	191, 207
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	2 cut(s)	189, 205
MboII	GAAGA	6 cut(s)	73, 79, 137, 215, 332, 496
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	7 cut(s)	99, 109, 228, 583, 637, 642, 649
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	4 cut(s)	160, 219, 250, 512
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	6 cut(s)	104, 114, 360, 536, 588, 652
MslI	CAYNNNNRTG	1 cut(s)	294
MspCI	CTTAAG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	2 cut(s)	189, 205
NlaIII	CATG	1 cut(s)	567
NlaIV	GGNNCC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	3 cut(s)	274, 488, 560
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PsiI	TTATAA	3 cut(s)	138, 635, 647
PspN4I	GGNNCC	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	6 cut(s)	104, 114, 360, 536, 588, 652
SatI	GCNGC	3 cut(s)	273, 487, 559
Sau3AI	GATC	2 cut(s)	189, 205
SchI	GAGTC	1 cut(s)	458
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	7 cut(s)	24, 150, 222, 397, 442, 448, 546
SfaNI	GCATC	4 cut(s)	284, 295, 365, 456
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	7 cut(s)	99, 109, 228, 583, 637, 642, 649
SsiI	CCGC	2 cut(s)	273, 559
SspMI	CTAG	3 cut(s)	200, 212, 390
TaaI	ACNGT	2 cut(s)	245, 329
TaiI	ACGT	2 cut(s)	397, 442
TaqI	TCGA	1 cut(s)	402
TasI	AATT	7 cut(s)	99, 109, 228, 583, 637, 642, 649
TauI	GCSGC	2 cut(s)	275, 561
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	6 cut(s)	104, 114, 360, 536, 588, 652
Tru9I	TTAA	6 cut(s)	104, 114, 360, 536, 588, 652
TscAI	CASTG	1 cut(s)	536
TseI	GCWGC	1 cut(s)	486
TspDTI	ATGAA	7 cut(s)	17, 48, 59, 80, 138, 312, 348
TspRI	CASTG	1 cut(s)	536
Vha464I	CTTAAG	1 cut(s)	535
XapI	RAATTY	3 cut(s)	228, 583, 637
XbaI	TCTAGA	2 cut(s)	211, 389
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	200, 212, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.