pycom01g04280

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
3193004 .. 3193564
561 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGTTTTATTGTTTGCTTATGATCCAAAACATAGTTTACTGTGTTCTTGTAGTTGGCGGGGGAAATATCTTCCGTGGATCTTCCTGGGTGGGAAGCGGCGGTCTTGATCAATCATCTACTGATTACATCGGGATGTTGGCAACTGTCATGAACTCAATATTTCTTCAAACAACAATGGAAAGTATCGACATCCTTACTCGAGTGCAGACTGCCTTTCGAATGTCTGAGGTTGCAGAGCCTTATATACGTCGAAGAGCTATAAGGCATTTAGAAAAGGGGAGAGTTGTAATCTTTGCAGCTGGAACTGGAAATCCGTTCTTCACCACAGATACTGCTGCAGCGCTTTGTGGTGCAGAAGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

122

Amino Acids

13.2

Weight (kDa)

7.72

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 13 - 119 2.4e-06 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 96, 99
AclWI GGATC 2 cut(s) 16, 85
AfeI AGCGCT 1 cut(s) 342
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 83
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 2 cut(s) 257, 299
AluI AGCT 2 cut(s) 257, 299
AlwI GGATC 2 cut(s) 16, 85
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 198
Aor51HI AGCGCT 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 296, 335, 338
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 198
BbvI GCAGC 3 cut(s) 308, 322, 350
BciT130I CCWGG 1 cut(s) 85
BclI TGATCA 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 344
BisI GCNGC 4 cut(s) 97, 297, 336, 339
BlsI GCNGC 4 cut(s) 98, 298, 337, 340
Bme1390I CCNGG 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 85
Bpu14I TTCGAA 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 73, 84
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 73, 84
BseGI GGATG 2 cut(s) 138, 189
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 3 cut(s) 308, 322, 350
BsgI GTGCAG 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 21, 77, 106
BspACI CCGC 3 cut(s) 57, 96, 99
BspCNI CTCAG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 2 cut(s) 16, 85
BspQI GCTCTTC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 217
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 73, 84
BssMI GATC 3 cut(s) 21, 77, 106
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 41, 145
Bst6I CTCTTC 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 138, 189
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 24, 80, 109
BstMBI GATC 3 cut(s) 21, 77, 106
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 308, 322, 350
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 138, 189
CaiI CAGNNNCTG 1 cut(s) 332
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 343
CviAII CATG 1 cut(s) 148
CviJI RGCY 3 cut(s) 238, 257, 299
CviKI_1 RGCY 3 cut(s) 238, 257, 299
DdeI CTNAG 1 cut(s) 225
DpnI GATC 3 cut(s) 23, 79, 108
DpnII GATC 3 cut(s) 21, 77, 106
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 83
FaeI CATG 1 cut(s) 151
FaiI YATR 6 cut(s) 20, 32, 149, 243, 245, 260
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 97, 297, 336, 339
FokI GGATG 2 cut(s) 145, 176
Fsp4HI GCNGC 4 cut(s) 97, 297, 336, 339
GlaI GCGC 1 cut(s) 342
GluI GCNGC 4 cut(s) 97, 297, 336, 339
HaeII RGCGCY 1 cut(s) 344
HhaI GCGC 1 cut(s) 343
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 3 cut(s) 104, 130, 148
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 41, 145
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 5 cut(s) 205, 233, 296, 338, 353
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 21, 77, 106
LguI GCTCTTC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 70, 97, 285, 291
Lsp1109I GCAGC 3 cut(s) 308, 322, 350
MaeII ACGT 1 cut(s) 247
MalI GATC 3 cut(s) 23, 79, 108
MboI GATC 3 cut(s) 21, 77, 106
MboII GAAGA 5 cut(s) 61, 72, 155, 264, 310
MflI RGATCY 1 cut(s) 77
MnlI CCTC 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
NdeII GATC 3 cut(s) 21, 77, 106
NlaIII CATG 1 cut(s) 151
NspV TTCGAA 1 cut(s) 217
PaeR7I CTCGAG 1 cut(s) 198
PagI TCATGA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 247
PkrI GCNGC 4 cut(s) 98, 298, 337, 340
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspXI VCTCGAGB 1 cut(s) 198
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 247
SatI GCNGC 4 cut(s) 97, 297, 336, 339
Sau3AI GATC 3 cut(s) 21, 77, 106
ScrFI CCNGG 1 cut(s) 85
SetI ASST 5 cut(s) 231, 250, 259, 301, 361
SfcI CTRYAG 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SsiI CCGC 3 cut(s) 57, 96, 99
SspI AATATT 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 41, 145
TaiI ACGT 1 cut(s) 250
TaqI TCGA 4 cut(s) 186, 199, 217, 250
TauI GCSGC 1 cut(s) 99
TseI GCWGC 3 cut(s) 296, 335, 338
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 2 cut(s) 62, 303
XhoI CTCGAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.