pycom01g04410

TIR domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
3301854 .. 3304082
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1713 bp
ATGGGATTGAGAGCGATGTCCGATTGCCTTGTACAAAATTCACCAAGAAACGGTCTTCATGCCTCTTTCTTTGCACTCAAGTTTTTTCCCCTTCATTTGCAAATGCGGAGTTCATGGTTTTTAGGAAAACTAATATACAAAAATAAGTGGTATTGTATGGAATATTTAAGACAATTTGATTATATACGAGAGATTCCTCGTAGGGTTGGTCGAGTTTATGCAATTGTCACCTCACCACTGTTGAACATGAAATTGTCTAATTCTCCTTTGATGTTCTCCTTAAGCATGGAGCGTACAAAATTATCTATAACTGGCAGTTCAAAAACCGACAAAAAACGTATATTACTGACGGATTTTAAGCAAAATCCGACAGAAAATGAATGCAGTGTCAGATATAATAAGCAACAGAATTGCCAGCGTCAAGAAATGAATTTTCCAACAGAAAATACTCTAAAACCGACAGAAATTCATTTTCTGTCAGATAAAACCGACAGAAAATATACAAAACCAATAAATAAGACTATTCTCTGTCGGATAAAACCGACATATCCCTTCTTCTTCTCCTTCTCGTTGAAAGTGAAAGTGACGACTCCTTTCTTCTATGGTAGACTTTGTTTTACATTTTCTTCTTCGTATTCTTCTTCTGGTGGTGGTGCTGATGGTGCTGTTCCTGCTGTTGATGATGATGATGCCCCAACTCTTCAAGAAAAGAATGATGTGTTTATTAGTTTCAGAGGTGAAGACAGCCGCCCTACTTTTACCAGCCATCTTCATGATGCTTTACTGTTCAAGAAAATTGATGCATACATAGATTACAGACTTGAGAGAGGAGACGAAATTGGAACTGCCCTGGTAAAAGCAATCAAGAAGTCAAGGCTTTCGATCATCATTTTCTCCAAAAACTATGTGTCTTCCACATGGTGTTTGATTGAAATGACCCAACATAAGGTACACCATATTCTTCACTTCCTACAGTTCATCCTGAAAATACAAAGGAATGGCGAAGAGTATGATTTGTCACCATGGATGGATCGTGAAGCTTATGTTTGGCCTGTGCAGAGAGTGACTGGATCTTTGAACAAGTCCACACTGATTAGGCATTTGAACAGATGGGGAATTCTCATTTCTTCAACTTGTTCTTTCATATATGGACAATGGATGAAAACCCAACTTAAACAAATTTACAAATGCGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGACTTCTAGCGCTTTGCTTGTCTTTGTGCTCAAGGGCTTGCATAGCTTCTGCCTTGTTCATCCATGGGGGAAGGGAGAAGCATCGGCGCAAGGAAAGAGATGGAGGGTTTTTATTTTGGAATATTGTCATTATTGTCAGTTAAAACCGACAGAAACATCCTTTTTAATAAAAACGAACAGAAAAGTTTCATTACTGTCGCCCGTCCCGAAACGTACATTTGAAATTACAATTTTACCCCTAAATTGTTCGTTTACGTGTAGTTTTGTGTTGTGTGGTGTAGTAGGACCACACACACTCATACATTTTCTTTTCTCCCGGGATTCCCTCCCTCATTCCCTCACTTTCTGTCACTTTGTCTCTCTCTCTCTCTCTCTCTCCCCGAGTTCATCTTCTTCTTCTTCCTTCTGCAAACACACGGACACACATACAAACCTAGTCAAACCTTCACCAATCAAGAAACCAATTACACCATTGAACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

571

Amino Acids

65.07

Weight (kDa)

9.54

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 239 - 313 2.3e-22 TIR domain
TIR_2 PF13676 240 - 314 3e-10 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 607
AciI CCGC 2 cut(s) 106, 748
AclWI GGATC 2 cut(s) 1038, 1078
AcsI RAATTY 5 cut(s) 37, 430, 465, 1116, 1179
AdeI CACNNNGTG 1 cut(s) 921
AfaI GTAC 4 cut(s) 33, 295, 951, 1444
AfeI AGCGCT 1 cut(s) 1240
AfiI CCNNNNNNNGG 2 cut(s) 50, 946
AflII CTTAAG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 1484
AjnI CCWGG 1 cut(s) 849
AluBI AGCT 2 cut(s) 1040, 1275
AluI AGCT 2 cut(s) 1040, 1275
Alw21I GWGCWC 1 cut(s) 1260
Alw26I GTCTC 3 cut(s) 825, 1223, 1591
AlwI GGATC 2 cut(s) 1038, 1078
Ama87I CYCGRG 2 cut(s) 1545, 1609
Aor51HI AGCGCT 1 cut(s) 1240
AoxI GGCC 1 cut(s) 1049
ApoI RAATTY 5 cut(s) 37, 430, 465, 1116, 1179
ArsI GACNNNNNNTTYG 2 cut(s) 1057, 1089
Asp700I GAANNNNTTC 1 cut(s) 1414
AspLEI GCGC 2 cut(s) 1241, 1318
AspS9I GGNCC 1 cut(s) 1514
AsuC2I CCSGG 2 cut(s) 1546, 1547
AsuHPI GGTGA 6 cut(s) 33, 220, 225, 749, 1011, 1668
AvaI CYCGRG 2 cut(s) 1545, 1609
AvaII GGWCC 1 cut(s) 1514
BauI CACGAG 1 cut(s) 1708
BbsI GAAGAC 3 cut(s) 47, 747, 903
Bbv12I GWGCWC 1 cut(s) 1260
BccI CCATC 5 cut(s) 653, 774, 1021, 1104, 1323
BciT130I CCWGG 1 cut(s) 851
BcnI CCSGG 2 cut(s) 1546, 1547
BcoDI GTCTC 3 cut(s) 825, 1223, 1591
BfaI CTAG 2 cut(s) 1236, 1664
BfmI CTRYAG 1 cut(s) 971
BfoI RGCGCY 1 cut(s) 1242
BfrI CTTAAG 1 cut(s) 280
BisI GCNGC 1 cut(s) 748
BlsI GCNGC 1 cut(s) 749
Bme1390I CCNGG 3 cut(s) 851, 1546, 1547
Bme18I GGWCC 1 cut(s) 1514
BmeT110I CYCGRG 2 cut(s) 1545, 1609
BmgT120I GGNCC 1 cut(s) 1514
BmrFI CCNGG 3 cut(s) 851, 1546, 1547
BmsI GCATC 4 cut(s) 679, 766, 790, 1319
BpiI GAAGAC 3 cut(s) 47, 747, 903
BpuEI CTTGAG 3 cut(s) 62, 842, 1244
BpuMI CCSGG 2 cut(s) 1546, 1547
BsaAI YACGTR 1 cut(s) 1485
BsaJI CCNNGG 4 cut(s) 849, 1022, 1292, 1545
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 946
Bse1I ACTGG 2 cut(s) 316, 1072
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 4 cut(s) 849, 1022, 1292, 1545
BseGI GGATG 5 cut(s) 978, 1032, 1164, 1288, 1385
BseLI CCNNNNNNNGG 2 cut(s) 50, 946
BseNI ACTGG 2 cut(s) 316, 1072
BseRI GAGGAG 1 cut(s) 843
BsgI GTGCAG 1 cut(s) 1076
BshFI GGCC 1 cut(s) 1051
BsiHKAI GWGCWC 1 cut(s) 1260
BsiHKCI CYCGRG 2 cut(s) 1545, 1609
BsiSI CCGG 1 cut(s) 1546
BslFI GGGAC 1 cut(s) 1418
BslI CCNNNNNNNGG 2 cut(s) 50, 946
BsmAI GTCTC 3 cut(s) 825, 1223, 1591
BsmBI CGTCTC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 1418
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 1 cut(s) 1051
BsoBI CYCGRG 2 cut(s) 1545, 1609
Bsp1286I GDGCHC 1 cut(s) 1260
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 882, 1030, 1070
Bsp19I CCATGG 2 cut(s) 1022, 1292
BspACI CCGC 2 cut(s) 106, 748
BspANI GGCC 1 cut(s) 1051
BspHI TCATGA 1 cut(s) 772
BspPI GGATC 2 cut(s) 1038, 1078
BspTI CTTAAG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 31
BsrI ACTGG 2 cut(s) 316, 1072
BssECI CCNNGG 4 cut(s) 849, 1022, 1292, 1545
BssMI GATC 3 cut(s) 882, 1030, 1070
BssSI CACGAG 1 cut(s) 1708
BssT1I CCWWGG 2 cut(s) 1022, 1292
Bst2BI CACGAG 1 cut(s) 1708
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 5 cut(s) 53, 240, 786, 975, 1425
Bst6I CTCTTC 2 cut(s) 705, 999
BstAFI CTTAAG 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 1485
BstC8I GCNNGC 2 cut(s) 416, 1268
BstDSI CCRYGG 2 cut(s) 1022, 1292
BstF5I GGATG 5 cut(s) 978, 1032, 1164, 1288, 1385
BstH2I RGCGCY 1 cut(s) 1242
BstHHI GCGC 2 cut(s) 1241, 1318
BstKTI GATC 3 cut(s) 885, 1033, 1073
BstMAI GTCTC 3 cut(s) 825, 1223, 1591
BstMBI GATC 3 cut(s) 882, 1030, 1070
BstMWI GCNNNNNNNGC 3 cut(s) 662, 671, 1272
BstNI CCWGG 1 cut(s) 851
BstSCI CCNGG 3 cut(s) 849, 1544, 1545
BstSFI CTRYAG 1 cut(s) 971
BstV2I GAAGAC 3 cut(s) 47, 747, 903
BstX2I RGATCY 1 cut(s) 1070
BstYI RGATCY 1 cut(s) 1070
BsuRI GGCC 1 cut(s) 1051
BtgI CCRYGG 2 cut(s) 1022, 1292
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 5 cut(s) 978, 1032, 1164, 1288, 1385
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 3 cut(s) 236, 391, 1088
Cac8I GCNNGC 2 cut(s) 416, 1268
CciI TCATGA 1 cut(s) 772
CfoI GCGC 2 cut(s) 1241, 1318
Cfr13I GGNCC 1 cut(s) 1514
Cfr9I CCCGGG 1 cut(s) 1545
CseI GACGC 1 cut(s) 407
Csp6I GTAC 4 cut(s) 32, 294, 950, 1443
CviAII CATG 8 cut(s) 59, 114, 247, 286, 773, 918, 1023, 1293
CviJI RGCY 7 cut(s) 747, 765, 877, 1040, 1051, 1266, 1275
CviKI_1 RGCY 7 cut(s) 747, 765, 877, 1040, 1051, 1266, 1275
CviQI GTAC 4 cut(s) 32, 294, 950, 1443
DpnI GATC 3 cut(s) 884, 1032, 1072
DpnII GATC 3 cut(s) 882, 1030, 1070
DraIII CACNNNGTG 1 cut(s) 921
Eam1104I CTCTTC 2 cut(s) 705, 999
EarI CTCTTC 2 cut(s) 705, 999
Eco130I CCWWGG 2 cut(s) 1022, 1292
Eco47I GGWCC 1 cut(s) 1514
Eco47III AGCGCT 1 cut(s) 1240
Eco88I CYCGRG 2 cut(s) 1545, 1609
EcoRI GAATTC 1 cut(s) 1116
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 2 cut(s) 1022, 1292
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 1022, 1292
Esp3I CGTCTC 1 cut(s) 825
FaeI CATG 8 cut(s) 62, 117, 250, 289, 776, 921, 1026, 1296
FaqI GGGAC 1 cut(s) 1418
FatI CATG 8 cut(s) 58, 113, 246, 285, 772, 917, 1022, 1292
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 1 cut(s) 748
FokI GGATG 5 cut(s) 965, 1039, 1171, 1275, 1372
Fsp4HI GCNGC 1 cut(s) 748
FspBI CTAG 2 cut(s) 1236, 1664
GlaI GCGC 2 cut(s) 1240, 1317
GluI GCNGC 1 cut(s) 748
HaeII RGCGCY 1 cut(s) 1242
HaeIII GGCC 1 cut(s) 1051
HapII CCGG 1 cut(s) 1546
HgaI GACGC 1 cut(s) 407
HhaI GCGC 2 cut(s) 1241, 1318
Hin1II CATG 8 cut(s) 62, 117, 250, 289, 776, 921, 1026, 1296
Hin6I GCGC 2 cut(s) 1239, 1316
HinP1I GCGC 2 cut(s) 1239, 1316
HindIII AAGCTT 1 cut(s) 1038
HinfI GANTC 3 cut(s) 193, 589, 1550
HpaII CCGG 1 cut(s) 1546
HphI GGTGA 6 cut(s) 33, 220, 225, 749, 1011, 1668
Hpy166II GTNNAC 4 cut(s) 608, 952, 1086, 1482
Hpy188I TCNGA 6 cut(s) 22, 369, 392, 481, 534, 734
Hpy8I GTNNAC 4 cut(s) 608, 952, 1086, 1482
HpyAV CCTTC 6 cut(s) 101, 562, 574, 1294, 1642, 1683
HpyCH4III ACNGT 5 cut(s) 53, 240, 786, 975, 1425
HpyCH4IV ACGT 3 cut(s) 337, 1441, 1484
HpyCH4V TGCA 8 cut(s) 74, 100, 221, 384, 803, 1057, 1270, 1638
HpyF10VI GCNNNNNNNGC 3 cut(s) 662, 671, 1272
HpySE526I ACGT 3 cut(s) 337, 1441, 1484
Hsp92II CATG 8 cut(s) 62, 117, 250, 289, 776, 921, 1026, 1296
HspAI GCGC 2 cut(s) 1239, 1316
Kzo9I GATC 3 cut(s) 882, 1030, 1070
LmnI GCTCC 1 cut(s) 289
LweI GCATC 4 cut(s) 679, 766, 790, 1319
MaeI CTAG 2 cut(s) 1236, 1664
MaeII ACGT 3 cut(s) 337, 1441, 1484
MaeIII GTNAC 5 cut(s) 226, 583, 1017, 1063, 1577
MalI GATC 3 cut(s) 884, 1032, 1072
MboI GATC 3 cut(s) 882, 1030, 1070
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 1070
MhlI GDGCHC 1 cut(s) 1260
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 3 cut(s) 392, 461, 512
MnlI CCTC 9 cut(s) 73, 207, 241, 728, 821, 1326, 1565, 1569, 1577
Mph1103I ATGCAT 1 cut(s) 805
MroXI GAANNNNTTC 1 cut(s) 1414
MseI TTAA 6 cut(s) 167, 281, 357, 1173, 1370, 1394
MslI CAYNNNNRTG 1 cut(s) 771
MspCI CTTAAG 1 cut(s) 280
MspI CCGG 1 cut(s) 1546
MspR9I CCNGG 3 cut(s) 851, 1546, 1547
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 1 cut(s) 851
MwoI GCNNNNNNNGC 3 cut(s) 662, 671, 1272
NciI CCSGG 2 cut(s) 1546, 1547
NcoI CCATGG 2 cut(s) 1022, 1292
NdeII GATC 3 cut(s) 882, 1030, 1070
NlaIII CATG 8 cut(s) 62, 117, 250, 289, 776, 921, 1026, 1296
NmuCI GTSAC 5 cut(s) 226, 583, 1017, 1063, 1577
NsiI ATGCAT 1 cut(s) 805
PagI TCATGA 1 cut(s) 772
PcsI WCGNNNNNNNCGW 1 cut(s) 1433
PctI GAATGC 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 1414
PfeI GAWTC 2 cut(s) 193, 1550
PkrI GCNGC 1 cut(s) 749
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
Ppu21I YACGTR 1 cut(s) 1485
Psp6I CCWGG 1 cut(s) 849
PspGI CCWGG 1 cut(s) 849
PspPI GGNCC 1 cut(s) 1514
PsuI RGATCY 1 cut(s) 1070
RsaI GTAC 4 cut(s) 33, 295, 951, 1444
RsaNI GTAC 4 cut(s) 32, 294, 950, 1443
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 6 cut(s) 167, 281, 357, 1173, 1370, 1394
SatI GCNGC 1 cut(s) 748
Sau3AI GATC 3 cut(s) 882, 1030, 1070
Sau96I GGNCC 1 cut(s) 1514
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 3 cut(s) 851, 1546, 1547
SduI GDGCHC 1 cut(s) 1260
SfaNI GCATC 4 cut(s) 679, 766, 790, 1319
SfcI CTRYAG 1 cut(s) 971
SinI GGWCC 1 cut(s) 1514
SmaI CCCGGG 1 cut(s) 1547
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 4 cut(s) 77, 280, 821, 1259
SmoI CTYRAG 4 cut(s) 77, 280, 821, 1259
SsiI CCGC 2 cut(s) 106, 748
SspI AATATT 2 cut(s) 164, 1352
SspMI CTAG 2 cut(s) 1236, 1664
StyD4I CCNGG 3 cut(s) 849, 1544, 1545
StyI CCWWGG 2 cut(s) 1022, 1292
TaaI ACNGT 5 cut(s) 53, 240, 786, 975, 1425
TaiI ACGT 3 cut(s) 340, 1444, 1487
TaqI TCGA 2 cut(s) 211, 881
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 750
TfiI GAWTC 2 cut(s) 193, 1550
Tru1I TTAA 6 cut(s) 167, 281, 357, 1173, 1370, 1394
Tru9I TTAA 6 cut(s) 167, 281, 357, 1173, 1370, 1394
TscAI CASTG 3 cut(s) 243, 391, 1095
TseFI GTSAC 5 cut(s) 226, 583, 1017, 1063, 1577
Tsp45I GTSAC 5 cut(s) 226, 583, 1017, 1063, 1577
TspGWI ACGGA 2 cut(s) 365, 1661
TspMI CCCGGG 1 cut(s) 1545
TspRI CASTG 3 cut(s) 243, 391, 1095
Vha464I CTTAAG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 1514
XapI RAATTY 5 cut(s) 37, 430, 465, 1116, 1179
XmaI CCCGGG 1 cut(s) 1545
XmiI GTMKAC 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 1414
XspI CTAG 2 cut(s) 1236, 1664
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.