pycom01g04500

Component of the post-replicative DNA mismatch repair system (MMR)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
3356037 .. 3358837
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2013 bp
ATGCAATTGGAAATCGTTTTATTATGCAACCATTCAATTCCATCCATTTGTTCTTTCTTTTATTGTCTGCTAAGCAAATTTTATGAACTTTTTGAAATGGATGCACATATAGGAGCAAAAGAACTTGGTCTGCAGTATATGAAGGTAATATATCTTGAAATTTTGTCTTGGTGTTGGCCTTGTGGGCGGGCAGTGGCACATGATTTTGTATTGTTAGGATTGCTGAATGCTTCCATTGTGCTTCCTATTTGTTTTTCTTTAGTTACTGATTTTTTATTAAAGTTCAGCATCTATGTGAAGCCTCTTTCACACTATGTTCTTGTAGTGGAGCAGACAGAAACACCTAAACAGATGGATCTTCGTCGTAAAGAGGATGGCTCTATAGATAAGGTATGCTCATTTTTCACTTGTCGGTCTGTATCCTTGAATTTTTGTCATCTGATTAATTTGATATTCTATGTTATAATTCTTACCACTGCACGTTGTAATTTGATACCCGTTGTGAAACGTGAAATATGTGCAGTGGTTACAAAAGGAACACTAACTGAGGGAGATATGCTGTCAGCAAACCCTGATGCTTCTTATCTAATGGCAGTGACTGAAAATTCTCAGAATTTGGCAAACGAAAATGCAGAGCGGGTTTTTGGGGTTTGTATGAGTTTGGTAGAACATCATTTTGATCTTGTTCTCTTAGTTATCTTGGATTATTCTCATCATTATATAGTTATATATGCACACATAATACAGTTGTTCCCTGAACTGGAGGGGTTTTTGGTAACCGCTAAGGATAATAGTGTGATCTTCTGCTGCCTGATGGAGTTTGTGGATGTATGCATTGCATTTCCATTATATTTTAGCTATCTGAGGACGTATATAATCATTTGGGCAAGTTGTGACATTGTTACTCCTAATTACCATTTCATAAGATTGTGTTTTTTACTAGTATTTCTTTCCCAATACCAGTTTGGAGATGATCGAGCGTGCAGTGCCTTGTCTTGTCTCTTGTTTGAGATGAGGCCTGTTGAAATTGTAAAACCTGCAAATCTACTTAGTCCTGAAACAGAGAAAGTGCTGATTAGGCATACAAGCAGTCCTCTAGTGAAGGACATTAGATTGCTTAGAACATGGCTTGCAAGACCTCTCTATCGTGTAGAGTTAATAAAGCAACGCCAGGATGCTGTTGCAAGTCTTCGGGTACTCCGTACATATTATTTTAACATTTTACTTCTATATCTAGATGACTTGAACTGGATATCCAAGCACTTGCCCTTTCTAATATACAAATGTTATATATGCTTCTTTCTAGGGAGCTTCCAGACATGGAGCGGTTGCTTGTGCGTGTCTTCTCTAGTAGGTAAAACTAGGAATAACAGCAGTTATGCTTACGAAATGAATGCTAAGAAAGTGGTTTTATACGAGGATGCTGCAAAAAAAAACAGCTTCAGGAGTTTATTTCAGCTCTACGTGGTTGTGAACTCATGGCTCAAACATGTTGTTCTCTTAAAGTTATCTTGGAAAATGTTGAATCTTTATATTTGTATTATTTTAAAAGATATAGTTTTCTTTGTGTTTAACATGCAAGGTTTCTCGAGGTACTGGACCCCAGATATTAAGAAGTCATTGACAGAGCTCTCGCAAGCTGAAACTGACAAGGAGTCCTCACTAAAAAGCATTTTGCAGAGGTTAATTGGACGTTTCTGCGAGCATCGTCTTAAATGGAGACAATTGGTCTCTTTGACTGCAGGTGTGCAATCTTTTCCCCTTTGCATTGGCTGCTTTTCTGGAGCATGGTTTGTCATTCGCCTTTTTTTAGTGAGTGCATTCTGCTATGTATGCAATATAAGAGGAATCACACACACACACACACACACACATAAGAGTACTTGTGAACACGAAAAATTCCTGAAACAAGAAACAATAATACGTCGATCTCAAATTTGGTCCTTTGATTCTATCTTCGTAGGGTGTAGGTTTGTGGATGAGTTGTTGATCCAAAGGGCCGTCGGGGCTTGA

Protein Analysis

671

Amino Acids

77.55

Weight (kDa)

8.42

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MutS_III PF05192 371 - 579 1.8e-06 MutS domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AarI CACCTGC 1 cut(s) 1733
Acc36I ACCTGC 2 cut(s) 1045, 1733
AccBSI CCGCTC 2 cut(s) 637, 1326
AciI CCGC 4 cut(s) 187, 637, 780, 1326
AclWI GGATC 2 cut(s) 363, 1984
AcsI RAATTY 7 cut(s) 77, 159, 427, 604, 613, 1898, 1935
AcuI CTGAAG 1 cut(s) 1426
AfaI GTAC 4 cut(s) 1197, 1204, 1595, 1882
AfiI CCNNNNNNNGG 1 cut(s) 760
AflIII ACRYGT 1 cut(s) 1489
AgsI TTSAA 7 cut(s) 36, 95, 158, 427, 1025, 1246, 1525
AhdI GACNNNNNGTC 2 cut(s) 1654, 1727
AhlI ACTAGT 1 cut(s) 940
AjnI CCWGG 1 cut(s) 1170
AloI GAACNNNNNNTCC 2 cut(s) 1238, 1270
AluBI AGCT 6 cut(s) 858, 1311, 1440, 1459, 1630, 1640
AluI AGCT 6 cut(s) 858, 1311, 1440, 1459, 1630, 1640
Alw21I GWGCWC 1 cut(s) 1632
Alw26I GTCTC 3 cut(s) 1004, 1714, 1735
AlwI GGATC 2 cut(s) 363, 1984
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 1588
AoxI GGCC 3 cut(s) 176, 1016, 1998
ApeKI GCWGC 3 cut(s) 807, 1424, 1773
ApoI RAATTY 7 cut(s) 77, 159, 427, 604, 613, 1898, 1935
AseI ATTAAT 1 cut(s) 444
AspS9I GGNCC 3 cut(s) 1599, 1941, 1998
AvaI CYCGRG 1 cut(s) 1588
AvaII GGWCC 2 cut(s) 1599, 1941
BanII GRGCYC 1 cut(s) 1632
BbsI GAAGAC 2 cut(s) 1181, 1335
Bbv12I GWGCWC 1 cut(s) 1632
BbvI GCAGC 3 cut(s) 794, 1411, 1760
BccI CCATC 4 cut(s) 49, 346, 368, 808
BceAI ACGGC 1 cut(s) 1985
BcgI CGANNNNNNTGC 4 cut(s) 1376, 1406, 1410, 1440
BciT130I CCWGG 1 cut(s) 1172
BciVI GTATCC 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 1004, 1714, 1735
BcuI ACTAGT 1 cut(s) 940
BfaI CTAG 6 cut(s) 941, 1097, 1235, 1304, 1349, 1362
BfmI CTRYAG 3 cut(s) 131, 381, 1740
BfuAI ACCTGC 2 cut(s) 1045, 1733
BfuI GTATCC 1 cut(s) 430
BglI GCCNNNNNGGC 2 cut(s) 184, 2006
BisI GCNGC 3 cut(s) 808, 1425, 1774
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 3 cut(s) 809, 1426, 1775
BmcAI AGTACT 1 cut(s) 1882
Bme1390I CCNGG 1 cut(s) 1172
Bme18I GGWCC 2 cut(s) 1599, 1941
BmeRI GACNNNNNGTC 2 cut(s) 1654, 1727
BmeT110I CYCGRG 1 cut(s) 1588
BmgT120I GGNCC 3 cut(s) 1599, 1941, 1998
BmiI GGNNCC 1 cut(s) 1601
BmrFI CCNGG 1 cut(s) 1172
BmsI GCATC 6 cut(s) 91, 297, 565, 1165, 1411, 1714
BpiI GAAGAC 2 cut(s) 1181, 1335
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpmI CTGGAG 2 cut(s) 782, 1803
Bpu10I CCTNAGC 1 cut(s) 783
Bpu1102I GCTNAGC 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 1465
BsaI GGTCTC 1 cut(s) 1735
Bsc4I CCNNNNNNNGG 1 cut(s) 760
Bse1I ACTGG 4 cut(s) 765, 961, 1253, 1601
Bse3DI GCAATG 1 cut(s) 834
BseBI CCWGG 1 cut(s) 1172
BseGI GGATG 7 cut(s) 41, 106, 379, 832, 1180, 1426, 1984
BseLI CCNNNNNNNGG 1 cut(s) 760
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 3 cut(s) 537, 623, 854
BseNI ACTGG 4 cut(s) 765, 961, 1253, 1601
BseXI GCAGC 3 cut(s) 794, 1411, 1760
BsgI GTGCAG 3 cut(s) 462, 540, 1003
BshFI GGCC 3 cut(s) 178, 1018, 2000
BsiHKAI GWGCWC 1 cut(s) 1632
BsiHKCI CYCGRG 1 cut(s) 1588
BslI CCNNNNNNNGG 1 cut(s) 760
BsmAI GTCTC 3 cut(s) 1004, 1714, 1735
BsmI GAATGC 3 cut(s) 232, 1399, 1820
BsnI GGCC 3 cut(s) 178, 1018, 2000
Bso31I GGTCTC 1 cut(s) 1735
BsoBI CYCGRG 1 cut(s) 1588
Bsp1286I GDGCHC 1 cut(s) 1632
Bsp143I GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 4 cut(s) 187, 637, 780, 1326
BspANI GGCC 3 cut(s) 178, 1018, 2000
BspCNI CTCAG 3 cut(s) 538, 622, 855
BspLI GGNNCC 1 cut(s) 1601
BspMAI CTGCAG 2 cut(s) 135, 1744
BspMI ACCTGC 2 cut(s) 1045, 1733
BspPI GGATC 2 cut(s) 363, 1984
BspTNI GGTCTC 1 cut(s) 1735
BsrBI CCGCTC 2 cut(s) 637, 1326
BsrDI GCAATG 1 cut(s) 834
BsrI ACTGG 4 cut(s) 765, 961, 1253, 1601
BssMI GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 1 cut(s) 747
BstAPI GCANNNNNTGC 1 cut(s) 1773
BstBAI YACGTR 1 cut(s) 1465
BstC8I GCNNGC 5 cut(s) 189, 982, 1131, 1638, 1703
BstDEI CTNAG 9 cut(s) 71, 546, 609, 691, 783, 863, 1049, 1118, 1398
BstEII GGTNACC 1 cut(s) 775
BstF5I GGATG 7 cut(s) 41, 106, 379, 832, 1180, 1426, 1984
BstKTI GATC 6 cut(s) 358, 682, 801, 976, 1931, 1992
BstMAI GTCTC 3 cut(s) 1004, 1714, 1735
BstMBI GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
BstMWI GCNNNNNNNGC 6 cut(s) 184, 986, 1078, 1773, 1833, 2006
BstNI CCWGG 1 cut(s) 1172
BstNSI RCATGY 2 cut(s) 1493, 1579
BstPI GGTNACC 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 1170
BstSFI CTRYAG 3 cut(s) 131, 381, 1740
BstV1I GCAGC 3 cut(s) 794, 1411, 1760
BstV2I GAAGAC 2 cut(s) 1181, 1335
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 3 cut(s) 178, 1018, 2000
BtsCI GGATG 7 cut(s) 41, 106, 379, 832, 1180, 1426, 1984
BtsI GCAGTG 5 cut(s) 198, 474, 528, 600, 991
BtsIMutI CAGTG 5 cut(s) 198, 474, 528, 600, 991
BveI ACCTGC 2 cut(s) 1045, 1733
Cac8I GCNNGC 5 cut(s) 189, 982, 1131, 1638, 1703
CaiI CAGNNNCTG 1 cut(s) 599
Cfr13I GGNCC 3 cut(s) 1599, 1941, 1998
Csp6I GTAC 4 cut(s) 1196, 1203, 1594, 1881
CviAII CATG 7 cut(s) 200, 1125, 1320, 1479, 1490, 1576, 1788
CviQI GTAC 4 cut(s) 1196, 1203, 1594, 1881
DdeI CTNAG 9 cut(s) 71, 546, 609, 691, 783, 863, 1049, 1118, 1398
DpnI GATC 6 cut(s) 357, 681, 800, 975, 1930, 1991
DpnII GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
DraI TTTAAA 1 cut(s) 1548
DriI GACNNNNNGTC 2 cut(s) 1654, 1727
Eam1105I GACNNNNNGTC 2 cut(s) 1654, 1727
Ecl136II GAGCTC 1 cut(s) 1630
Eco147I AGGCCT 1 cut(s) 1018
Eco24I GRGCYC 1 cut(s) 1632
Eco31I GGTCTC 1 cut(s) 1735
Eco32I GATATC 1 cut(s) 1254
Eco47I GGWCC 2 cut(s) 1599, 1941
Eco53kI GAGCTC 1 cut(s) 1630
Eco57I CTGAAG 1 cut(s) 1426
Eco88I CYCGRG 1 cut(s) 1588
Eco91I GGTNACC 1 cut(s) 775
EcoICRI GAGCTC 1 cut(s) 1630
EcoO65I GGTNACC 1 cut(s) 775
EcoRII CCWGG 1 cut(s) 1170
EcoRV GATATC 1 cut(s) 1254
EcoT22I ATGCAT 1 cut(s) 836
EcoT38I GRGCYC 1 cut(s) 1632
FaeI CATG 7 cut(s) 203, 1128, 1323, 1482, 1493, 1579, 1791
FatI CATG 7 cut(s) 199, 1124, 1319, 1478, 1489, 1575, 1787
FauI CCCGC 2 cut(s) 180, 630
Fnu4HI GCNGC 3 cut(s) 808, 1425, 1774
FokI GGATG 7 cut(s) 28, 113, 386, 839, 1187, 1433, 1991
FriOI GRGCYC 1 cut(s) 1632
Fsp4HI GCNGC 3 cut(s) 808, 1425, 1774
FspBI CTAG 6 cut(s) 941, 1097, 1235, 1304, 1349, 1362
GluI GCNGC 3 cut(s) 808, 1425, 1774
GsuI CTGGAG 2 cut(s) 782, 1803
HaeIII GGCC 3 cut(s) 178, 1018, 2000
Hin1II CATG 7 cut(s) 203, 1128, 1323, 1482, 1493, 1579, 1791
HinfI GANTC 4 cut(s) 1525, 1655, 1848, 1949
Hpy166II GTNNAC 2 cut(s) 1474, 1889
Hpy188I TCNGA 3 cut(s) 441, 612, 864
Hpy188III TCNNGA 8 cut(s) 155, 1055, 1235, 1315, 1444, 1588, 1782, 1903
Hpy8I GTNNAC 2 cut(s) 1474, 1889
Hpy99I CGWCG 3 cut(s) 366, 1929, 2006
HpyAV CCTTC 2 cut(s) 136, 1096
HpyCH4III ACNGT 1 cut(s) 747
HpyCH4IV ACGT 6 cut(s) 481, 508, 869, 1464, 1693, 1924
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 986, 1078, 1773, 1833, 2006
HpyF3I CTNAG 9 cut(s) 71, 546, 609, 691, 783, 863, 1049, 1118, 1398
HpySE526I ACGT 6 cut(s) 481, 508, 869, 1464, 1693, 1924
Hsp92II CATG 7 cut(s) 203, 1128, 1323, 1482, 1493, 1579, 1791
Kzo9I GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
LmnI GCTCC 5 cut(s) 113, 328, 1308, 1323, 1784
Lsp1109I GCAGC 3 cut(s) 794, 1411, 1760
LweI GCATC 6 cut(s) 91, 297, 565, 1165, 1411, 1714
MaeI CTAG 6 cut(s) 941, 1097, 1235, 1304, 1349, 1362
MaeII ACGT 6 cut(s) 481, 508, 869, 1464, 1693, 1924
MaeIII GTNAC 6 cut(s) 262, 526, 595, 775, 893, 901
MalI GATC 6 cut(s) 357, 681, 800, 975, 1930, 1991
MbiI CCGCTC 2 cut(s) 637, 1326
MboI GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
MboII GAAGA 5 cut(s) 350, 793, 1181, 1335, 1948
MfeI CAATTG 2 cut(s) 5, 1724
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 1632
MlyI GAGTC 1 cut(s) 1664
Mph1103I ATGCAT 1 cut(s) 836
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 1172
MunI CAATTG 2 cut(s) 5, 1724
Mva1269I GAATGC 3 cut(s) 232, 1399, 1820
MvaI CCWGG 1 cut(s) 1172
MwoI GCNNNNNNNGC 6 cut(s) 184, 986, 1078, 1773, 1833, 2006
NdeII GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
NlaIII CATG 7 cut(s) 203, 1128, 1323, 1482, 1493, 1579, 1791
NlaIV GGNNCC 1 cut(s) 1601
NmuCI GTSAC 2 cut(s) 595, 893
NsiI ATGCAT 1 cut(s) 836
NspI RCATGY 2 cut(s) 1493, 1579
PaeR7I CTCGAG 1 cut(s) 1588
PaqCI CACCTGC 1 cut(s) 1733
PceI AGGCCT 1 cut(s) 1018
PciI ACATGT 1 cut(s) 1489
PcsI WCGNNNNNNNCGW 1 cut(s) 1198
PctI GAATGC 3 cut(s) 232, 1399, 1820
PfeI GAWTC 3 cut(s) 1525, 1848, 1949
PkrI GCNGC 3 cut(s) 809, 1426, 1775
PleI GAGTC 1 cut(s) 1663
PpsI GAGTC 1 cut(s) 1663
Ppu21I YACGTR 1 cut(s) 1465
PscI ACATGT 1 cut(s) 1489
PshBI ATTAAT 1 cut(s) 444
PsiI TTATAA 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 1632
Psp6I CCWGG 1 cut(s) 1170
PspEI GGTNACC 1 cut(s) 775
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 1 cut(s) 1601
PspPI GGNCC 3 cut(s) 1599, 1941, 1998
PstI CTGCAG 2 cut(s) 135, 1744
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 4 cut(s) 1197, 1204, 1595, 1882
RsaNI GTAC 4 cut(s) 1196, 1203, 1594, 1881
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 1632
SatI GCNGC 3 cut(s) 808, 1425, 1774
Sau3AI GATC 6 cut(s) 355, 679, 798, 973, 1928, 1989
Sau96I GGNCC 3 cut(s) 1599, 1941, 1998
ScaI AGTACT 1 cut(s) 1882
SchI GAGTC 1 cut(s) 1664
ScrFI CCNGG 1 cut(s) 1172
SduI GDGCHC 1 cut(s) 1632
SfaNI GCATC 6 cut(s) 91, 297, 565, 1165, 1411, 1714
SfcI CTRYAG 3 cut(s) 131, 381, 1740
Sfr274I CTCGAG 1 cut(s) 1588
SinI GGWCC 2 cut(s) 1599, 1941
SlaI CTCGAG 1 cut(s) 1588
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 1588
SmoI CTYRAG 1 cut(s) 1588
SpeI ACTAGT 1 cut(s) 940
SseBI AGGCCT 1 cut(s) 1018
SsiI CCGC 4 cut(s) 187, 637, 780, 1326
SspMI CTAG 6 cut(s) 941, 1097, 1235, 1304, 1349, 1362
SstI GAGCTC 1 cut(s) 1632
StuI AGGCCT 1 cut(s) 1018
StyD4I CCNGG 1 cut(s) 1170
TaaI ACNGT 1 cut(s) 747
TaiI ACGT 6 cut(s) 484, 511, 872, 1467, 1696, 1927
TaqI TCGA 3 cut(s) 976, 1589, 1927
TaqII GACCGA 1 cut(s) 402
TatI WGTACW 1 cut(s) 1880
TfiI GAWTC 3 cut(s) 1525, 1848, 1949
TscAI CASTG 5 cut(s) 198, 481, 528, 600, 991
TseFI GTSAC 2 cut(s) 595, 893
TseI GCWGC 3 cut(s) 807, 1424, 1773
Tsp45I GTSAC 2 cut(s) 595, 893
TspDTI ATGAA 4 cut(s) 99, 155, 910, 1406
TspGWI ACGGA 1 cut(s) 1190
TspRI CASTG 5 cut(s) 198, 481, 528, 600, 991
VpaK11BI GGWCC 2 cut(s) 1599, 1941
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 7 cut(s) 77, 159, 427, 604, 613, 1898, 1935
XbaI TCTAGA 1 cut(s) 1234
XceI RCATGY 2 cut(s) 1493, 1579
XcmI CCANNNNNNNNNTGG 1 cut(s) 962
XhoI CTCGAG 1 cut(s) 1588
XspI CTAG 6 cut(s) 941, 1097, 1235, 1304, 1349, 1362
ZrmI AGTACT 1 cut(s) 1882
Zsp2I ATGCAT 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.