pycom01g04640

TSL-kinase interacting protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
3711520 .. 3712784
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGGGTACGGTTTATGGCGGCAATATATATAATATATATATATATATATATAGAGGTCGAGGCCCACTCAATCTCAAACAGGGCTTTCTAAATTCCAAATTTATTCCCGCCAAACTCACTCTCTGTCTCTCTCTCTCGATTAAGCTTCTAGAGAAACAAACAGGAAGGTCGATCAAGGTTCCTATAGAGGGAAAAGCACGTATAGGAAGTACTATGAGAGAACAGAGATTTACAGGGAGAAATACCCGAGTCTGCCACAAAGCAACAGGGAAAGGTGGCAATTTCTTGGTTGAAATGGACGAGAATGCCGGGCATGTGTCTGGAGCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.11

Weight (kDa)

10.13

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 108
AcsI RAATTY 2 cut(s) 91, 98
AfaI GTAC 2 cut(s) 7, 211
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 2 cut(s) 145, 326
AluI AGCT 2 cut(s) 145, 326
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 61
ApoI RAATTY 2 cut(s) 91, 98
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpuMI CCSGG 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 188
BshFI GGCC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 246
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 2 cut(s) 18, 108
BspANI GGCC 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 180
BssMI GATC 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 200
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 6, 210
CviAII CATG 1 cut(s) 314
CviJI RGCY 4 cut(s) 63, 84, 145, 326
CviKI_1 RGCY 4 cut(s) 63, 84, 145, 326
CviQI GTAC 2 cut(s) 6, 210
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 246
FaeI CATG 1 cut(s) 317
FatI CATG 1 cut(s) 313
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 149
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 309
Hin1II CATG 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 249
HpaII CCGG 1 cut(s) 309
Hpy188III TCNNGA 4 cut(s) 136, 149, 321, 330
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 1 cut(s) 317
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 6 cut(s) 65, 147, 219, 252, 306, 322
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 199
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MluCI AATT 3 cut(s) 91, 98, 280
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 3 cut(s) 47, 53, 181
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 310
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 1 cut(s) 180
NspI RCATGY 1 cut(s) 317
PctI GAATGC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 62
RsaI GTAC 2 cut(s) 7, 211
RsaNI GTAC 2 cut(s) 6, 210
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 62
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 310
SetI ASST 7 cut(s) 58, 147, 170, 180, 202, 277, 328
SfcI CTRYAG 1 cut(s) 183
Sse9I AATT 3 cut(s) 91, 98, 280
SsiI CCGC 2 cut(s) 18, 108
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 202
TaqI TCGA 3 cut(s) 58, 137, 170
TasI AATT 3 cut(s) 91, 98, 280
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
XapI RAATTY 2 cut(s) 91, 98
XbaI TCTAGA 1 cut(s) 148
XceI RCATGY 1 cut(s) 317
XspI CTAG 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.