Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4147046 .. 4148072

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATGAGAACAGCCAAGTAACGTTTTCTTCATGGGGAACAGATGCCGCAAAACAAGATTGCTGCAGATGGAAAGGAGTCGCCTGTGACAACCGAACAGGCCATGTTGTGAAACTTGTTTTTTGGCCAGGAATTCCAATTGAAAGTAAATCAATTTCAACCATTGAGAGTTGGAATGACTTCAATCGGAGCCAAATTCCAGAGTTCATTGGTTCTCTCAGCAACTTAAGACTGGGTTCCACCTTTCCAATTGGAAGTCATAAGATTGGGATCTTACAAAATGGGCTCAAATTTCCCAAAATGGCTTCAAACGCAGAAGAATTTTTCAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

112

Amino Acids

12.41

Weight (kDa)

6.72

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	4 cut(s)	132, 195, 290, 320
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	5 cut(s)	143, 159, 184, 309, 328
AjnI	CCWGG	1 cut(s)	127
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	100, 125
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	4 cut(s)	132, 195, 290, 320
Asp700I	GAANNNNTTC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	64
BfrI	CTTAAG	1 cut(s)	226
BisI	GCNGC	2 cut(s)	48, 64
BlsI	GCNGC	2 cut(s)	49, 65
Bme1390I	CCNGG	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	191, 238
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	102, 127
BsnI	GGCC	2 cut(s)	102, 127
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	102, 127
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	191, 238
BspMAI	CTGCAG	1 cut(s)	68
BspPI	GGATC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	102, 127
BtsCI	GGATG	1 cut(s)	10
CviAII	CATG	2 cut(s)	33, 104
CviJI	RGCY	6 cut(s)	15, 102, 127, 192, 286, 305
CviKI_1	RGCY	6 cut(s)	15, 102, 127, 192, 286, 305
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	2 cut(s)	36, 107
FaiI	YATR	3 cut(s)	34, 105, 261
FatI	CATG	2 cut(s)	32, 103
Fnu4HI	GCNGC	2 cut(s)	48, 64
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	48, 64
GluI	GCNGC	2 cut(s)	48, 64
HaeIII	GGCC	2 cut(s)	102, 127
Hin1II	CATG	2 cut(s)	36, 107
HinfI	GANTC	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	36, 107
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	84, 97, 114, 141, 213, 218
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	19, 86
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	2 cut(s)	21, 329
MfeI	CAATTG	2 cut(s)	138, 249
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	7 cut(s)	132, 138, 153, 195, 249, 290, 320
MluNI	TGGCCA	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	152
Mox20I	TGGCCA	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	127
MspCI	CTTAAG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	2 cut(s)	138, 249
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	36, 107
NlaIV	GGNNCC	2 cut(s)	191, 238
NmuCI	GTSAC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	49, 65
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	191, 238
PstI	CTGCAG	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	2 cut(s)	48, 64
Sau3AI	GATC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	2 cut(s)	26, 245
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	7 cut(s)	132, 138, 153, 195, 249, 290, 320
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	127
TaiI	ACGT	1 cut(s)	26
TasI	AATT	7 cut(s)	132, 138, 153, 195, 249, 290, 320
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	21, 196
Vha464I	CTTAAG	1 cut(s)	226
XapI	RAATTY	4 cut(s)	132, 195, 290, 320
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.