pycom01g05240

DNA polymerase III

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
4869496 .. 4870030
535 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGTATATATACGTTAGGATGAATCTGGAGGTCCTCAAGAACTGTGCAACCGTGCTATTTTTGGAAGCAAACCTCCCCGGCGTGTTAAATGGAAACTGGCCTGGCTCTTCAACGATTACAACGCGGAGTAGAAGTAACGGGAAATTGCCATTCAGAGAAGAAACTAGCCGCAAGTCTGCACCAACTACGGCTTCTAATTGTTCTCATAGAGCTGTTCCATATGACTCAAGGGGGAGCTTGGGAAAGGTTTTATTTACTATAATTTAA

Protein Analysis

89

Amino Acids

9.71

Weight (kDa)

9.92

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AciI CCGC 2 cut(s) 124, 169
AgsI TTSAA 1 cut(s) 111
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 2 cut(s) 212, 237
AluI AGCT 2 cut(s) 212, 237
AoxI GGCC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 78
BfaI CTAG 1 cut(s) 165
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 78, 102
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 78, 102
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 2 cut(s) 20, 211
BpuMI CCSGG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 78
BsnI GGCC 1 cut(s) 100
BspACI CCGC 2 cut(s) 124, 169
BspANI GGCC 1 cut(s) 100
BspFNI CGCG 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 44, 52
Bst6I CTCTTC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 124
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 2 cut(s) 76, 100
BstUI CGCG 1 cut(s) 124
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 31
CviJI RGCY 6 cut(s) 100, 105, 168, 191, 212, 237
CviKI_1 RGCY 6 cut(s) 100, 105, 168, 191, 212, 237
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 100
FaiI YATR 7 cut(s) 6, 8, 10, 207, 220, 222, 260
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 1 cut(s) 165
GluI GCNGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 78
HinfI GANTC 2 cut(s) 22, 224
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 26, 37
HpyCH4III ACNGT 2 cut(s) 44, 52
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 47, 179
HpySE526I ACGT 1 cut(s) 12
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 5 cut(s) 11, 82, 87, 91, 114
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 134
MboII GAAGA 2 cut(s) 99, 170
MluCI AATT 3 cut(s) 143, 196, 261
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 3 cut(s) 22, 44, 83
MseI TTAA 2 cut(s) 86, 265
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 78, 102
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 124
NciI CCSGG 1 cut(s) 78
NdeI CATATG 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 86, 265
SatI GCNGC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 78, 102
SetI ASST 6 cut(s) 15, 33, 75, 214, 239, 249
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 2 cut(s) 35, 226
SmoI CTYRAG 2 cut(s) 35, 226
Sse9I AATT 3 cut(s) 143, 196, 261
SsiI CCGC 2 cut(s) 124, 169
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 76, 100
TaaI ACNGT 2 cut(s) 44, 52
TaiI ACGT 1 cut(s) 15
TasI AATT 3 cut(s) 143, 196, 261
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 86, 265
Tru9I TTAA 2 cut(s) 86, 265
TspDTI ATGAA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 31
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.