Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4871750 .. 4873249

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTTTGTAGGCATCTTTTTAACGATGCTTATGTGATCATATCATTCACAAAGATTATTCTCATCTCAATTGGACCAGGCACAGAAACACTTGGAAAACTTCCGAGAACTGATATATTTTGCGACACTGCTCAATATCCTATGGCTGTTAAAATTCCTGGAATCATGATAATACGTGTCAAGTCTGCCTTGTTTTGTTTTGCAAATGCCAATTTCGTCAGAGAAAGCTTTCAAGAGATTTATATAACCTCCTCTCCTTTGTTTTTACCCCCTTTCTGTACGACAGATTTGATTAACATTGATACATCGGGAATAGCTTCTCTAGAGGAGCTGCAAAAGAATTTGATCTCCGAAGGAATTGAGTTAACCGTTGCAAACCCTAGGTGGCTAGTGATTCACAAACTAAAGCTATCCAACTTTGTGGAAAAAATTGGAGGAAGGGTCTTCGTGACGGTCGGAGAAGCAGTGGATGCAAGATTCAGTGAAAAATTGCCACCACCTGCTAATGCAAGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

173

Amino Acids

19.07

Weight (kDa)

6.72

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAS	PF01740	46 - 155	6.8e-15	STAS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	153, 340
AfaI	GTAC	1 cut(s)	280
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	76, 157
AluBI	AGCT	5 cut(s)	228, 317, 331, 409, 513
AluI	AGCT	5 cut(s)	228, 317, 331, 409, 513
ApeKI	GCWGC	2 cut(s)	331, 513
ApoI	RAATTY	2 cut(s)	153, 340
Asp700I	GAANNNNTTC	2 cut(s)	228, 316
AspA2I	CCTAGG	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	74
AvrII	CCTAGG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	2 cut(s)	318, 500
BciT130I	CCWGG	2 cut(s)	78, 159
BclI	TGATCA	1 cut(s)	36
BfaI	CTAG	4 cut(s)	323, 381, 389, 517
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	2 cut(s)	332, 514
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	2 cut(s)	333, 515
Bme1390I	CCNGG	2 cut(s)	78, 159
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	78, 159
BmsI	GCATC	3 cut(s)	16, 22, 460
BpiI	GAAGAC	1 cut(s)	436
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	380
BsaXI	ACNNNNNCTCC	6 cut(s)	238, 268, 426, 450, 456, 480
BseBI	CCWGG	2 cut(s)	78, 159
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	475
BseRI	GAGGAG	2 cut(s)	241, 341
BseXI	GCAGC	2 cut(s)	318, 500
Bsh1285I	CGRYCG	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	36, 345
BspHI	TCATGA	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	36, 345
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	2 cut(s)	78, 159
Bst4CI	ACNGT	2 cut(s)	370, 454
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	511
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	2 cut(s)	39, 348
BstMBI	GATC	2 cut(s)	36, 345
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	2 cut(s)	78, 159
BstSCI	CCNGG	2 cut(s)	76, 157
BstV1I	GCAGC	2 cut(s)	318, 500
BstV2I	GAAGAC	1 cut(s)	436
BstXI	CCANNNNNNTGG	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	2 cut(s)	126, 471
BtsIMutI	CAGTG	3 cut(s)	126, 471, 487
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	511
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	146, 228, 317, 331, 388, 409, 513
CviKI_1	RGCY	7 cut(s)	146, 228, 317, 331, 388, 409, 513
CviQI	GTAC	1 cut(s)	279
DpnI	GATC	2 cut(s)	38, 347
DpnII	GATC	2 cut(s)	36, 345
Eco130I	CCWWGG	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	76, 157
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	169
FaiI	YATR	7 cut(s)	33, 41, 116, 143, 167, 243, 245
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	332, 514
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	2 cut(s)	332, 514
FspBI	CTAG	4 cut(s)	323, 381, 389, 517
GluI	GCNGC	2 cut(s)	332, 514
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	3 cut(s)	162, 394, 477
HpaI	GTTAAC	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	4 cut(s)	105, 221, 352, 458
Hpy188III	TCNNGA	5 cut(s)	166, 233, 309, 323, 448
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	2 cut(s)	347, 432
HpyCH4III	ACNGT	2 cut(s)	370, 454
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	5 cut(s)	203, 334, 374, 473, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	36
KspAI	GTTAAC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	36, 345
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	5 cut(s)	63, 90, 144, 171, 513
Lsp1109I	GCAGC	2 cut(s)	318, 500
LweI	GCATC	3 cut(s)	16, 22, 460
MaeI	CTAG	4 cut(s)	323, 381, 389, 517
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	38, 347
MboI	GATC	2 cut(s)	36, 345
MboII	GAAGA	1 cut(s)	436
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	7 cut(s)	69, 153, 211, 340, 357, 429, 488
MmeI	TCCRAC	2 cut(s)	436, 438
MnlI	CCTC	4 cut(s)	259, 262, 319, 428
MroXI	GAANNNNTTC	2 cut(s)	228, 316
MseI	TTAA	4 cut(s)	21, 150, 294, 365
MspR9I	CCNGG	2 cut(s)	78, 159
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	2 cut(s)	78, 159
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	2 cut(s)	36, 345
NlaIII	CATG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	448
PagI	TCATGA	1 cut(s)	165
PaqCI	CACCTGC	1 cut(s)	508
PdmI	GAANNNNTTC	2 cut(s)	228, 316
PfeI	GAWTC	3 cut(s)	162, 394, 477
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	333, 515
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	76, 157
PspGI	CCWGG	2 cut(s)	76, 157
PspPI	GGNCC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	21, 150, 294, 365
SatI	GCNGC	2 cut(s)	332, 514
Sau3AI	GATC	2 cut(s)	36, 345
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	78, 159
SetI	ASST	9 cut(s)	178, 230, 251, 319, 333, 386, 411, 502, 515
SfaNI	GCATC	3 cut(s)	16, 22, 460
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	7 cut(s)	69, 153, 211, 340, 357, 429, 488
SspMI	CTAG	4 cut(s)	323, 381, 389, 517
StyD4I	CCNGG	2 cut(s)	76, 157
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	2 cut(s)	370, 454
TaiI	ACGT	1 cut(s)	178
TasI	AATT	7 cut(s)	69, 153, 211, 340, 357, 429, 488
TfiI	GAWTC	3 cut(s)	162, 394, 477
Tru1I	TTAA	4 cut(s)	21, 150, 294, 365
Tru9I	TTAA	4 cut(s)	21, 150, 294, 365
TscAI	CASTG	3 cut(s)	133, 471, 487
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	331, 513
Tsp45I	GTSAC	1 cut(s)	448
TspRI	CASTG	3 cut(s)	133, 471, 487
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	2 cut(s)	153, 340
XbaI	TCTAGA	1 cut(s)	322
XmaJI	CCTAGG	1 cut(s)	380
XmnI	GAANNNNTTC	2 cut(s)	228, 316
XspI	CTAG	4 cut(s)	323, 381, 389, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.