Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5606995 .. 5608615

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAATTTACAATTCCCCCTGAATTCAATCTGACACCTGGTGGACCACCTGTTTGGGTTTCATTAGCAGAAACGGGTTATTATGGATTTAAGCCTACAGTTTGTGCTCTTTGCAATTCAAAGACCCATGATATTTTGCATTATCCTGAGAGGAAATATTTTCCAGATTATGTCCAGGAGTATATAAATATGAGAAACAATTCAAAATGGAACTGGAACAATCCCCATTCAGAAAAGCAAAAGCAAGAGGAGGTCATTGATCACTTCGTGAAGCAAGCCTCATCAGTCGATGGCTCCGCCCTCGGCCCCCTCGTCGCAAAAGTCACCTCCCACCCTGCCCTTTTTGCCTTTTCGGAAATTATCGATGTCCCTAATGTTCTTCAGGTTCCTATGTTTCTATTTATTTATTGTGGAAGTTTCATTTTTCTTTGTATATTTTGGCGGTTCACAGTAAGAAAGGACAGAAAATATAGGAGGAGGTACACTGCAGAAATTGAGATAGAAATTGAGAGAAGAAAGAAGCAACGAAGTACTGCCGGAAGAGAAGACGAAGTAATTCCATTACCGGCGATTCCGAACCAGGCCTTTCAAGAAAGGAAAGCAAACTGCAAGCAACAATCAGAAGGTACAAAACTATGTTTCTTTTCTCTTCATTTTCTCCCCAGTAAAATTATTTTGCGGGCAAACGTTGTCTTTAAAAACTTTGGGCAGCAACAAGAACTTATATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

244

Amino Acids

28.31

Weight (kDa)

8.9

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	297, 442, 679
AclI	AACGTT	1 cut(s)	687
AcsI	RAATTY	2 cut(s)	5, 23
AcuI	CTGAAG	1 cut(s)	365
AdeI	CACNNNGTG	2 cut(s)	41, 268
AfaI	GTAC	3 cut(s)	482, 532, 628
AgsI	TTSAA	4 cut(s)	28, 120, 204, 590
AjnI	CCWGG	3 cut(s)	37, 174, 579
Alw21I	GWGCWC	1 cut(s)	109
AoxI	GGCC	2 cut(s)	304, 582
ApeKI	GCWGC	1 cut(s)	709
ApoI	RAATTY	2 cut(s)	5, 23
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
Asp700I	GAANNNNTTC	2 cut(s)	199, 555
AspS9I	GGNCC	2 cut(s)	44, 305
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	39, 176, 581
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	1 cut(s)	730
BfmI	CTRYAG	2 cut(s)	96, 486
BisI	GCNGC	1 cut(s)	710
BlsI	GCNGC	1 cut(s)	711
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	3 cut(s)	39, 176, 581
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 305
BmiI	GGNNCC	3 cut(s)	295, 307, 387
BmrFI	CCNGG	3 cut(s)	39, 176, 581
BmrI	ACTGGG	1 cut(s)	657
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	552
Bsa29I	ATCGAT	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	2 cut(s)	218, 663
BseBI	CCWGG	3 cut(s)	39, 176, 581
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	218, 663
BseRI	GAGGAG	2 cut(s)	263, 490
BseXI	GCAGC	1 cut(s)	721
BshFI	GGCC	2 cut(s)	306, 584
BshVI	ATCGAT	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	537, 566
BslFI	GGGAC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	306, 584
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	3 cut(s)	297, 442, 679
BspANI	GGCC	2 cut(s)	306, 584
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	363
BspLI	GGNNCC	3 cut(s)	295, 307, 387
BspMAI	CTGCAG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	2 cut(s)	218, 663
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	3 cut(s)	39, 176, 581
Bst4CI	ACNGT	2 cut(s)	100, 451
Bst6I	CTCTTC	2 cut(s)	535, 654
BstC8I	GCNNGC	3 cut(s)	276, 611, 681
BstDEI	CTNAG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	3 cut(s)	39, 176, 581
BstSCI	CCNGG	3 cut(s)	37, 174, 579
BstSFI	CTRYAG	2 cut(s)	96, 486
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	552
BstXI	CCANNNNNNTGG	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	306, 584
BsuTUI	ATCGAT	1 cut(s)	363
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	3 cut(s)	276, 611, 681
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	44, 305
ClaI	ATCGAT	1 cut(s)	363
CsiI	ACCWGGT	1 cut(s)	37
Csp6I	GTAC	3 cut(s)	481, 531, 627
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	5 cut(s)	94, 278, 294, 306, 584
CviKI_1	RGCY	5 cut(s)	94, 278, 294, 306, 584
CviQI	GTAC	3 cut(s)	481, 531, 627
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DraI	TTTAAA	1 cut(s)	697
DraIII	CACNNNGTG	2 cut(s)	41, 268
Eam1104I	CTCTTC	2 cut(s)	535, 654
EarI	CTCTTC	2 cut(s)	535, 654
EciI	GGCGGA	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	3 cut(s)	37, 174, 579
FaeI	CATG	1 cut(s)	131
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	127
FauI	CCCGC	1 cut(s)	672
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	710
Fsp4HI	GCNGC	1 cut(s)	710
FspBI	CTAG	1 cut(s)	730
GluI	GCNGC	1 cut(s)	710
HaeIII	GGCC	2 cut(s)	306, 584
HapII	CCGG	2 cut(s)	537, 566
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	537, 566
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	3 cut(s)	44, 447, 483
Hpy188I	TCNGA	5 cut(s)	33, 232, 355, 576, 622
Hpy188III	TCNNGA	4 cut(s)	146, 164, 268, 590
Hpy8I	GTNNAC	3 cut(s)	44, 447, 483
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	2 cut(s)	100, 451
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	4 cut(s)	114, 139, 488, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	1 cut(s)	721
MabI	ACCWGGT	1 cut(s)	37
MaeI	CTAG	1 cut(s)	730
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	5 cut(s)	371, 525, 552, 557, 641
MhlI	GDGCHC	1 cut(s)	109
MnlI	CCTC	9 cut(s)	144, 241, 244, 289, 311, 320, 337, 468, 471
MroXI	GAANNNNTTC	2 cut(s)	199, 555
MseI	TTAA	2 cut(s)	90, 696
MspI	CCGG	2 cut(s)	537, 566
MspR9I	CCNGG	3 cut(s)	39, 176, 581
MvaI	CCWGG	3 cut(s)	39, 176, 581
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	3 cut(s)	295, 307, 387
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	199, 555
PfeI	GAWTC	1 cut(s)	571
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	711
Psp1406I	AACGTT	1 cut(s)	687
Psp6I	CCWGG	3 cut(s)	37, 174, 579
PspGI	CCWGG	3 cut(s)	37, 174, 579
PspN4I	GGNNCC	3 cut(s)	295, 307, 387
PspPI	GGNCC	2 cut(s)	44, 305
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	3 cut(s)	482, 532, 628
RsaNI	GTAC	3 cut(s)	481, 531, 627
SaqAI	TTAA	2 cut(s)	90, 696
SatI	GCNGC	1 cut(s)	710
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	2 cut(s)	44, 305
ScaI	AGTACT	1 cut(s)	532
ScrFI	CCNGG	3 cut(s)	39, 176, 581
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	8 cut(s)	40, 52, 255, 329, 387, 482, 628, 690
SexAI	ACCWGGT	1 cut(s)	37
SfcI	CTRYAG	2 cut(s)	96, 486
SinI	GGWCC	1 cut(s)	44
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	3 cut(s)	297, 442, 679
SspI	AATATT	1 cut(s)	158
SspMI	CTAG	1 cut(s)	730
StuI	AGGCCT	1 cut(s)	584
StyD4I	CCNGG	3 cut(s)	37, 174, 579
TaaI	ACNGT	2 cut(s)	100, 451
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	2 cut(s)	288, 363
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	2 cut(s)	90, 696
Tru9I	TTAA	2 cut(s)	90, 696
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	709
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	51, 409, 641
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	5, 23
XmnI	GAANNNNTTC	2 cut(s)	199, 555
XspI	CTAG	1 cut(s)	730
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.